These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1130 fasta sequence [AAAGCAGTCTAATTGAGTACAGATATTTTGCGAAAATATTGCGCACTAGATATGATTCCTTGTACATAATTTCTTATCTATGAACACATTACCCTGATTGAGACATAAAGGCCACGTAATCTATGTATACTTATTCGTCGTTAACTTTTTTCAGATAAGCGTTCATTGATTCATAAGACTTAAATGTGAAATGAAAATGCTTTGTCACTAAGGTGACGTGCAGTTTTATACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC-AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA-GGTTTGGGAGCAGGAACAGGCATTG-GGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTAGGCCTCGAGCCGAGT] [+] EMBL CD084194 [AAAGCAGTCTAATTGAGTACAGATATTTTGCGAAAATATTGCGCACTAGATATGATTCCTTGTACATAATTTCTTATCTATGAACACATTACCCTGATTGAGACATAAAGGCCACGTAATCTATGTATACTTATTCGTCGTTAACTTTTTTCAGATAAGCGTTCATTGATTCATAAGACTTAAATGTGAAATGAAAATGCTTTGTCACTAAGGTGACGTGCAGTTTTATACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTAGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAACAAGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTCATGCTGACTG ] [+] EMBL CD076945 [ TTTTATACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGACCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTACCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATAGGGTTTGGGAGCAGGAACAGGCATTGNGGAT ] [+] EMBL CD074656 [ TACTATATTTGAGGGGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGGACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAACAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA GGTTTGGGAGCAGGAACAGGCA ] [+] EMBL BF936993 [ TACTATATTTGAGGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTAAATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTT ] [+] EMBL BF936673 [ AATCCAGAATGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAAC AGAGACAAAAAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGT ] [-] EMBL CD080733 [ AAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAAACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACTGTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACACAACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGATTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAACAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA GGTTTGGGAGCAGGAACAGGCATTG GGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTAGGCCTCGAGCCGAGT] [-] EMBL CD171564 [ GACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCCATTCAATATTTCTTTTCCAATAGTAGACCATAATATA GGTTTGGGAGCAGGAACAGGCATTG GGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGCGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATG ] consensusID : consensus_11014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1129 fasta sequence [AGGCATTGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCG-CCTTGGA-CCATAA-CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTTTCTTTTTNGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC-TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC-AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCATAGCATCATGCAACAAATCACAAGAGTAAAAC] [+] EMBL CD200717 [AGGCATTGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCG CCTTGGA CCATAA CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACT ] [-] EMBL CD200622 [ GGCATTGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCACTTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCG CCTTGGA CCATAA CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTT ] [-] EMBL BF440128 [ tgacacTTTCG TTA TTCGG ACGAGATGA CGT GTGAA GAG AGT GCGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGNCCTTGGANCCATAANCCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCAT AAAACGACCGGGACCTGTAAAATGACTTATGTCGTGATACTCAC TTCTTTTTNGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGA ] [-] EMBL CD155647 [ ATCAGATTTATTATTCCATCGGCG CCTTGGA CCATAA CCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC ] [-] EMBL CD077836 [ CCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATC ] [+] EMBL CD192183 [ acCGACGAGGTATTATAATGTGACTATGACGAAAATCAAATGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAG ] [+] EMBL CD140277 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGAT ] [+] EMBL CD196303 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTAAATTCGTCAGACGAGAGAAACGNTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGATTTCTTAGCC TTG AAACTTCGATTTTCGCTCAATAGGACTT ] [+] EMBL CD196334 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGCATAAGACGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGGTTATTGTATACAGCCGTCCCTGAATTCGACAGACGAGAGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTG ] [+] EMBL CD140099 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACCGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGGTTTTTCGTCTTG ] [+] EMBL CD140130 [ CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACCGTAGTC CAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTC ] [+] EMBL CD196271 [ CCATATCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGGTTTCTTAGCC TTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATT ] [-] EMBL CD140082 [ TTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCCTTTGAAAACTTCGATTTTCGCTCAATAGGACTTAAAGAACGTCGAGGACTGTAGTC AAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCAT ] [-] EMBL CD196317 [ cGTAGTCAAAAATTTTTTGAATGTGACCTTTGTCGATTTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCAT ] [+] EMBL CD148105 [ TTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTCGTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCCTGGTAATCATTGTTTAAACCTAAGCATCATGCAACAAATCACAAGAGTAAAAC] consensusID : consensus_11014#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACTTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATCAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAGTGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC] [-] EMBL CD089756 [GATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACTTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATCAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACAGGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAGTGTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC] consensusID : consensus_11014#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 417 fasta sequence [ATGATGCTTAGGTTTAAACAATGATTACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCAAGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGTCCTCGACGTTCTTTAAGTCCTATTGAGCGAAAATCGAAGTTTTCAAGGCTAAGAAAACCTGAAATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAACTACTGCACGTGATTCACATTCTCCTATATCTTTAACAGAACGTTTCACTCGTCTGACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTTTTGGAGATAACCATCGTCTTCCACATCTTATACTTACCAATAATACAAAAATCC] [+] EMBL CD140117 [ATGATGCTTAGGTTTAAACAATGATTACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCAAGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGTCCTCGACGTTCTTTAAGTCCTATTGAGCGAAAATCGAAGTTTTCAAGGCTAAGAAAACCTGAAATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAACTACTGCACGTGATTCACATTCTCCTATATCTTTAACAGAACGTTTCACTCGTCTGACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTTTTGGAGATAACCATCGTCTTCCACATCTTATACTTACCAATAATACAAAAATCC] [+] EMBL CD140245 [ atGGTTTAAACAATGATTACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCAAGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGTCCTCGACGTTCTTTAAGTCCTATTGAGCGAAAATCGAAGTTTTCAAGGCTAAGAAAACCTGAAATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAACTACTGCACGTGATTCACATTCTCCTATATCTTTAACAGAACGTTTCACTCGTCTGACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTCCTGGAGATAACCATCGTCTTCCACATCTTATAC ] consensusID : consensus_11014#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTTCGATTTTCGCTCAATAGGACTTANAGAACGTCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGATTTCTNTC] [+] EMBL CD196336 [CCATATTAAGAGGAAATGTTCGCTCTATGACAATTGAAATTTCTTTAGCCTGACGCATAAGAGTTGCTGCGTTTATTGTATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAATGTGAATCACGTGCAGTAGTTCGTACACCTTCAGTCTGAAAGTCAGTGATTGGATTAACACTTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTTCGATTTTCGCTCAATAGGACTTANAGAACGTCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGATTTCTNTC] consensusID : consensus_11014#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGATTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTC] [-] EMBL CD201209 [GGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGATTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTGTAAATCAGAGCTTC] consensusID : consensus_11014#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [CGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGCTTCATCAAAGAAATACCGGTCAGGTTATTTGTCAATTTCAAGTTTAATTTCATAAAGACATCACATTACTTTTACC] [+] EMBL CD155553 [CGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGACGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGCTTCATCAAAGAAATACCGGTCAGGTTATTTGTCAATTTCAAGTTTAATTTCATAAAGACATCACATTACTTTTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11014#1 ------------------------------------------------------------ consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 AAAGCAGTCTAATTGAGTACAGATATTTTGCGAAAATATTGCGCACTAGATATGATTCCT 60 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 -----------------------------------------------------AGGCATT 7 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 TGTACATAATTTCTTATCTATGAACACATTACCCTGATTGAGACATAAAGGCCACGTAAT 120 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 GGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCAC 67 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 CTATGTATACTTATTCGTCGTTAACTTTTTTCAGATAAGCGTTCATTGATTCATAAGACT 180 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 TTTTTCGGTTTAATTTCGGAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAGATCGA 127 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 TAAATGTGAAATGAAAATGCTTTGTCACTAAGGTGACGTGCAGTTTTATACTATATTTGA 240 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 CGGTCACGTCGGTAGCTAGAAGAGTACAAACGATCAGATTTATTATTCCACCGGCGCCTT 187 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 GGTGTGCAATAAAAATTTAACTATTTTGACAATTTCTACATTGAACGAGAAACCCAGTTA 300 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 GGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTTCGGAGTT 247 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 AATGAAGTATTTTTTCTGAAAACTCTATATATATGTATCAAAAAATAACGAAATCCAGAA 360 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 TCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTACTCGACTG 307 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 TGCAAACGTAAGTTGCTTATATAAACAAATTGAATATACAAGCAATATAACAGAGACAAA 420 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 CCATAAAAACGACCAGGACCTGTAAAATGACTTATGTCGTGATACTCACTTTCTTTTTNG 367 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 AAGTGGTTATTGTCAAAACAAAATGCGTAATTTGTAATGCTGACTGTACAAATCAGACAA 480 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 TTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTGTCCATTAAACGTTTG 427 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 ACATCATCGTTCAATAGCTTCGTCAAATACATGATCAACATCTAGATGGAAAATTTCACT 540 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 TAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGGACGATCAAATACA 487 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 GTTCAAATGCTCTTCTTTGGTACATACGTTTTCATTACTACGAACCGTTGAATTGGACAC 600 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 GGTTTGCAACCTTCATTTGGACGACGAGGTATTATAATGTGACTATGACGAAAATCAAAT 547 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 GATTTATTATTCCATCGGCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGA 60 consensus_11014#0 AACTGATTGTACTTTTGTCTCTAATTTATTTGTGATATTTTCATTGTCTGTTAGCGGTGA 660 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 GTCACAGGTTTTTCATGTGGTGATAAATCCATATTAAGAGGAAATGTTCGCTCTATGACA 607 consensus_11014#4 ----------------------------CCATATTAAGAGGAAATGTTCGCTCTATGACA 32 consensus_11014#2 TAATAAGAATGTCCTTTCGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCC 120 consensus_11014#0 TTGGTTGGCTGCACTATTTGGACTGTAATTTTGGTCATCACTTACAGCAGTTTTATTTCC 720 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ----------------------------------ATGATGCTTAGGTTTAAACAATGATT 26 consensus_11014#1 ATTGAAATTTCTTTAGCCTGACG--CATAAGAGTTGCTGGGGGGAGTTTTGTATTATTGG 665 consensus_11014#4 ATTGAAATTTCTTTAGCCTGACG--CATAAGAGTTGCTG--------------------- 69 consensus_11014#2 ATCAAACGTTCATCTACTCGACTGCCATAAAAACGACCAGGACTTTCTTTTTTGTTGTCC 180 consensus_11014#0 ATTCAATATTTCTTTTCCAATAGTAGACCATAATATAGGTTTGGGAGCAGGAACAGGCAT 780 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 ACCAGGAAGCGCTCATACTCATCACGTTCCCGTTCCAGGTCATCAGGATTTTATACACCA 86 consensus_11014#1 TAAGTATAAGATGTGGAAGACGATGGTTATCTCCAAAACGACCATACCTGCGTTTATTGT 725 consensus_11014#4 --------------------------------------------------CGTTTATTGT 79 consensus_11014#2 GTATTATTGGATCTTCGTGAATTCGAGGAC-------------------GAAATCGTGTC 221 consensus_11014#0 TGGGATCGGTTTTTGTGAACTACTGTCTCCTTCCATCTCTTCGAATTTATCGTGGAGCCA 840 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 ------------------------------------------------------------ consensus_11014#3 AGACGAAAAAACCGATCCAGAAATCGACAAAGGTCACATTCAAAAAATTTTGACTACAGT 146 consensus_11014#1 ATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAAT 785 consensus_11014#4 ATACAGCCGTCCCTGAATTCGTCAGACGAGTGAAACGTTCTGTTAAAGATATAGGAGAAT 139 consensus_11014#2 CATCAAACGTTTGTAAATCAGAGCTTCATCCGCTTCAGTATTGTAAAACTTTAATCCAGG 281 consensus_11014#0 CTTTTTCGGTT--TAATTTCG--GAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAG 896 consensus_11014#6 ------CGGTT--TAATTTCG--GAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAG 50 consensus_11014#5 -------GGTT--TAATTTCG--GAACGAGATGACCGTGGTGAAGGAGAAGTGGGGCGAG 49 consensus_11014#3 CCTCGACGTTCTTTAAGTCCTATTGA-GCGAAAATCGAAGTTTTCAAGGC-TAAGAAAAC 204 * * * * * * * * consensus_11014#1 GTGAA---TCACGTGCAGTAGTTCGTAC-ACCTTCAGTCTGAAAGTCAGTGATTGGATTA 841 consensus_11014#4 GTGAA---TCACGTGCAGTAGTTCGTAC-ACCTTCAGTCTGAAAGTCAGTGATTGGATTA 195 consensus_11014#2 ACGA----TCAAATACAG--GTTTGCA--ACCTTCATTTGGACGACGAGGTATTATAATG 333 consensus_11014#0 ATCGACGGTCACGT-CGGTAGCTAGAAG-AGTACAAACGATCAGATTTATTATTCCATCG 954 consensus_11014#6 ATCGACGGTCACGT-CGGTAGCTAGAAG-AGTACAAACGATCAGATTTATTATTCCATCG 108 consensus_11014#5 ATCGACGGTCACGT-CGGTAGCTAGAAG-AGTACAAACGATCAGATTTATTATTCCATCG 107 consensus_11014#3 CTGAA---ATACAATCAAGTGTTAATCCAATCACTGACTTTCAGACTGAAGGTGTACGAA 261 * * * * * * consensus_11014#1 ACAC-TTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTT---CGATTTTCGCTCAAT 897 consensus_11014#4 ACAC-TTGATTGTATTTCAGGTTTTCTTAGCCTTGAAAACTT---CGATTTTCGCTCAAT 251 consensus_11014#2 TGAC-TATGACGAAAATCAAGTGTCACAGGTTTTTCATGTGG---TGATAAATCCATATT 389 consensus_11014#0 GCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTT 1014 consensus_11014#6 GCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGCTT-CATCAAAGAAATACCGG 167 consensus_11014#5 GCGCCTTGGACCATAACCATCTTCTGTTCGATCATCATGAAGATAATAAGAATGTCCTTT 167 consensus_11014#3 CTAC--TGCACGTGATTCACATTCTCCTATATCTTTAACAGA--ACGTTTCACTCGTCTG 317 * ** * * consensus_11014#1 AGGACTTAAAGAACG-TCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGAT 956 consensus_11014#4 AGGACTTANAGAACG-TCGAGGACTGTAGTCAAAATTTTTTGAATGTGACCTTTGTCGAT 310 consensus_11014#2 AAGAGGAAATGTTCGCTCTATGAC---AATTGAAATTTCTTTAGCCTGACGCATAAGAGT 446 consensus_11014#0 CGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTAC 1074 consensus_11014#6 TCAGGTTATTTGTCAATTTCAAGTTTAATTTCATAAAGACATCACATTACTTTTACC--- 224 consensus_11014#5 CGGAGTTTCTGAAGGATCCAAAGGATAAGTACGCTTTGAATCCATCAAACGTTCATCTAC 227 consensus_11014#3 ACGAATTCAGGGACGGCTGTATACAATAAACGCAGGTATGGTCGTTTTGGAGATAACCAT 377 * consensus_11014#1 TTCTTTCTTTCAACGAAGAACTGAACTTAGAGCGTTCATTGGATCTGGATCGGTTTTTTC 1016 consensus_11014#4 TTCTNTC----------------------------------------------------- 317 consensus_11014#2 TGCTGGGGGGAGTTTTGTATTATTGGTAAGTATAAGATGTGGAAGAC------------- 493 consensus_11014#0 TCGACTGCCATAAAAACGACCAGGACCTGTAAAATGACTTAGGCCTCGAGCCGAGT---- 1130 consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 TCGATTTCTTTTTTGTTGTCCGTATTATTGGATCTTCGTGAATTCGAGGACGAAATCGTG 287 consensus_11014#3 CGTCTTCCACATCTTATACTTACCAATAATACAAAAATCC-------------------- 417 consensus_11014#1 GTCTTGGTGTATAAAATCCTGATGACCTGGAACGGGAACGTGATGAGTATGAGCGCTTCC 1076 consensus_11014#4 ------------------------------------------------------------ consensus_11014#2 ------------------------------------------------------------ consensus_11014#0 ------------------------------------------------------------ consensus_11014#6 ------------------------------------------------------------ consensus_11014#5 TCCATTAAACGTTTGTAAATCAGAGCTTC------------------------------- 316 consensus_11014#3 ------------------------------------------------------------ consensus_11014#1 TGGTAATCATTGTTTAAACCATAGCATCATGCAACAAATCACAAGAGTAAAAC 1129 consensus_11014#4 ----------------------------------------------------- consensus_11014#2 ----------------------------------------------------- consensus_11014#0 ----------------------------------------------------- consensus_11014#6 ----------------------------------------------------- consensus_11014#5 ----------------------------------------------------- consensus_11014#3 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||