cluster # 1106

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Schistosoma mansoni
cluster # 1106 cluster # 1106 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1106#0 length = 625 sequences # 1

consensus_1106#1 length = 463 sequences # 1

consensusID : consensus_1106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCAGATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAACGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCATCGTGGAAGGGTTCTTCTAAAGGCACCTGAAAACGAAATTGGATTTGAAGTGGTCTTAATGACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGACCTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACGGATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCCCTCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTTCGGTCTTACCGTTCTTCAACCGACCTGCCTGGCATGGTANGACCTTGAGGAACGATTGTCTCAGCCAGTATAGCTTGTTGGGTTCA]

[+] EMBL CD159269             [TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCAGATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAACGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCATCGTGGAAGGGTTCTTCTAAAGGCACCTGAAAACGAAATTGGATTTGAAGTGGTCTTAATGACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGACCTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACGGATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCCCTCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTTCGGTCTTACCGTTCTTCAACCGACCTGCCTGGCATGGTANGACCTTGAGGAACGATTGTCTCAGCCAGTATAGCTTGTTGGGTTCA]




>consensus_1106#0
TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCA
GATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAA
CGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCA
TCGTGGAAGGGTTCTTCTAAAGGCACCTGAAAACGAAATTGGATTTGAAGTGGTCTTAAT
GACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGAC
CTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACGG
ATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCCC
TCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTG
TCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTTC
GGTCTTACCGTTCTTCAACCGACCTGCCTGGCATGGTANGACCTTGAGGAACGATTGTCT
CAGCCAGTATAGCTTGTTGGGTTCA

consensusID : consensus_1106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CTGGTGTCTGAAGGAAACACCTTACTGCCGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGAGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCNTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGACTGACTCATCACGATAGGCAAGCCCGACCATCACGTCAAGGTAGCAGCAACCTTACCTTAAACTTGAGTTTTAAGATCACCTTATACTTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTACAAATAATCTCTACTACCCGGGATAGCATTATTACTCCTACTAGTCTGGCATTTGTCTTGATAATTTTACGTCGTTACGTTGATATATTGTGGCGGCTTGAACCAATGACGTATGTGCCGTATCACTGCCAACAGAAATTAAATGGTACGGTGTCATCTGTAC]

[-] EMBL CD062837             [CTGGTGTCTGAAGGAAACACCTTACTGCCGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGAGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCNTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGACTGACTCATCACGATAGGCAAGCCCGACCATCACGTCAAGGTAGCAGCAACCTTACCTTAAACTTGAGTTTTAAGATCACCTTATACTTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTACAAATAATCTCTACTACCCGGGATAGCATTATTACTCCTACTAGTCTGGCATTTGTCTTGATAATTTTACGTCGTTACGTTGATATATTGTGGCGGCTTGAACCAATGACGTATGTGCCGTATCACTGCCAACAGAAATTAAATGGTACGGTGTCATCTGTAC]




>consensus_1106#1
CTGGTGTCTGAAGGAAACACCTTACTGCCGTCACACCTCTGTACAGTCAGCAGTACGACT
TCGCCTTCGGACCTTGAGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCNTG
GCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGACTGACTCATCACG
ATAGGCAAGCCCGACCATCACGTCAAGGTAGCAGCAACCTTACCTTAAACTTGAGTTTTA
AGATCACCTTATACTTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTA
CAAATAATCTCTACTACCCGGGATAGCATTATTACTCCTACTAGTCTGGCATTTGTCTTG
ATAATTTTACGTCGTTACGTTGATATATTGTGGCGGCTTGAACCAATGACGTATGTGCCG
TATCACTGCCAACAGAAATTAAATGGTACGGTGTCATCTGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1106#0      TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCA 60
consensus_1106#1      ------------------------------------------------------------
                                                                                  

consensus_1106#0      GATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAA 120
consensus_1106#1      ------------------------------CTGGTGTCTGAAGG--AAACACCTTACTGC 28
                                                     *      * ** *  **  ***  * *  

consensus_1106#0      CGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCA 180
consensus_1106#1      CGTCACACCTCTGT-ACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGAGTTTGCTGCT 87
                      **       *****  * ** ** **** **   *  **           ***  * ** 

consensus_1106#0      TCGTGGAAGGGTTCTTCTAAAGGCACCTGAA-AACGAAATTGGATTTGAAGTGGTCTTAA 239
consensus_1106#1      TTTAGTCTCACCGCTCTTCAAACGACCTGCNTGGCATGGTAGGACCTTGAGGAACGATTG 147
                      *   *        **  * **   *****     *    * ***  *  **      *  

consensus_1106#0      TGACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGA 299
consensus_1106#1      TT-CCAGCCAGTATAGCTCGACTGACTCATC-ACGA-TAGGCAAGCCCGACCAT-CACGT 203
                      *  ** *  **  *  *   * ** *  *   ** * *     **  **  **  ** * 

consensus_1106#0      CCTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACG 359
consensus_1106#1      CAAGGTAGCAGCAACCTTACCTTAAACT---TGAGTTTTAAG-----ATCACCTTATAC- 254
                      *    *    * *   **    * * **   *   * **  *     * * **  * ** 

consensus_1106#0      GATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCC 419
consensus_1106#1      --TTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTACAAATAATCTCT 312
                        * *   *      *    * ** * *   *  *    *   * ** * **      * 

consensus_1106#0      CTCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCT 479
consensus_1106#1      ACTACCCGGGATAGCATTATTACTCCTAC-----TAGTCTG--GCATTTGTCTTGATAAT 365
                         *   **** ****  **  **  **      * *****  * *     ***  *  *

consensus_1106#0      GTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTT 539
consensus_1106#1      TTTACGTCGTTACGTTGATA----TATTGTGGCGGCTT-GAACC---AATGACGTATGTG 417
                       * **  *  *     *  *    **      ** *** * ***     *    *  ** 

consensus_1106#0      CGGTCTTACCGTTCTTCAACCGAC-CTGCCTGGCATGGTANGACCTTGAGGAACGATTGT 598
consensus_1106#1      CCGTATCACTGC----CAACAGAAATTAAATGGTACGGTGTCATCTGTAC---------- 463
                      * ** * ** *     **** **   *   *** * ***   * **  *           

consensus_1106#0      CTCAGCCAGTATAGCTTGTTGGGTTCA 625
consensus_1106#1      ---------------------------