These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 740 fasta sequence [CAAACACAAACACAAAAGTCAGACATACAAGTGAC-GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCA--A-CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC-ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC-ACAAAAACTATACTCCCGTCTAGTCAGTACACT-CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA-ACACAAAAGTCAG-ACAT-CCAAGTG-ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACATGTCAAACAATCAAACCATCTGCAAAC] [-] EMBL CD113329 [CAAACACAAACACAAAAGTCAGACATACAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACCATTCAACATTCACATAACAACAACAACAACAACAACAACACCA C CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTTGATACAATTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAGCAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ] [+] EMBL CD196791 [ CATCCAAGTGACTGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ATAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCACCGGCACgcgtcaatg ] [+] EMBL CD196756 [ CAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ATAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCACCGGCACCGTCAACGCA ATAAAAACT ] [+] EMBL CD196417 [ CAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAGCCAACCACTCTTGTCACCGGCAGCGtcaat ] [+] EMBL CD085938 [ aca GGAGGACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT AACAACAACAACAACAACACCA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATTACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTTCACTCTCTCCATCGCCGAACCAACACCACCGTGTTCGCTCCTACAAAATGAACGAATCATACACAGAAACAACATATCACTAACTCGTCACAATAGACACACACGCTCGAACACAACNCA AAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCCCATAACAACAACCACAACAACAACACCAACACC ] [+] EMBL CD119234 [ GAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAAACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACA ] [+] EMBL CD085921 [ TTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT AACAACAACAACAACAACACCA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATTACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCTAACCAACACCACCGTCTTCGCTCCTACATAATAAACGAATTACACACGAAAACAACGTATCACTAGCTCGTCTCATTAAACACACACGCTCAAACTGCC GCACCAAAGTCAGTACATCCCAAGTGTACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCCTGAAACTAATATC ] [-] EMBL CD140382 [ AATATCAACTATTCAACATTCACATTACCACAACAACAACACCAACAACAACA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATC ] [-] EMBL CD140384 [ TATTCAAAATTCACATTACAACAACAACAACACCAACAACTACA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATC ] [-] EMBL CD179582 [ gCAACAACACCA C CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCTGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGAAACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ] [-] EMBL AI740237 [ TCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACAAAAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCGACAAAAACTATACTCCCGTCTAGTCAGTACAATACAAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACA ] [+] EMBL CD186762 [ ACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAA ] [-] EMBL CD123600 [ CAAACCATCTGCAAACACATCTACACAACTCAAATCGAATCACATCGCAACGCCTGTCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACGCAA ACACAAAAGTCAG ACAT ACAAGTG ACGGAGAACAACATCAATTCTCGAGGCAaagagagg ] [-] EMBL CD115752 [ gACACGACTCAAATCAAATCACATCGCAACGCCGAGCGACACACATCAC ACAAACACCCGGCAACTCACCTGAAACTCATCAACCAACCACTCAAGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGAGACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGC ] [+] EMBL CD136092 [ C ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAA ] [-] EMBL CD136067 [ ACAGACACCCGTCAACTCACCTGAGACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACATATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAAC ] [+] EMBL CD129748 [ ACACCTCTTCACAGTCCACTCTCTCCGTCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATCCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACAACACCACCGAAATACACTGCGAAAATCAACATGTCAAACAATCAAACCATCTGCAAAC] [+] EMBL CD086565 [ tgCACTGACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACACCACCACCAAAATACACTGGGAAAATCAA ] consensusID : consensus_11082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 574 fasta sequence [GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAATTCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAAAACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT] [+] EMBL CD196615 [GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAATTCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAAAACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTACATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATG ] [+] EMBL CD062674 [ ATCCTCATATAAAATAACTTTGTTCTGTGTGTGTACGTGTGAAGAATGGTCTATGTGACGACGGATGCTTTATTTACTGAAGACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT] [+] EMBL CD061971 [ gtactagcGTGTGGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTAC GCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT] [+] EMBL CD195222 [ GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTC ] [+] EMBL CD195115 [ GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTA ] consensusID : consensus_11082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATATATATATATATATGGATATATATATATATATATATGGAG] [+] EMBL CD075687 [ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATATATATATATATATGGATATATATATATATATATATGGAG] consensusID : consensus_11082#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 440 fasta sequence [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAG] [+] EMBL CD123456 [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCA ] [+] EMBL CD123440 [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCA ] [-] EMBL CD123397 [ agcAACGGCAGCAGCAACATCAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAG] [-] EMBL CD179650 [ AACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCTGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCACAAACGCAA ACACAAAagtcag ] consensusID : consensus_11082#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 372 fasta sequence [TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAAT] [+] EMBL CD119871 [TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAAT] [-] EMBL CD192964 [ CAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGC ] consensusID : consensus_11082#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC] [+] EMBL CD195175 [GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11082#0 CAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTC 60 consensus_11082#3 ------------------------------GTGACGGAGAACAACATCAATTCTCGAGTC 30 consensus_11082#4 ------------------------------------------------------------ consensus_11082#1 ---------------------------------------------GAGAATTGATGTTGT 15 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 -------------------------------------------------ATCCGTTTTAT 11 consensus_11082#0 AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT 120 consensus_11082#3 AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT 90 consensus_11082#4 ------------------------------------------------------------ consensus_11082#1 TCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATG 75 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 TACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTA 71 consensus_11082#0 CACATAACAACAACAACAACAACAACAACACCAACACCAAAATACACTGCGAAAATCAAC 180 consensus_11082#3 CACATAACAACAACGACAACAACAAC---ACCACCACCAAAATACACTGCGAAAATCAAC 147 consensus_11082#4 ------------------------------------------------------------ consensus_11082#1 TAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGT 135 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 CTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTAC 131 consensus_11082#0 AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA 240 consensus_11082#3 AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA 207 consensus_11082#4 ------------------------------------------------------------ consensus_11082#1 TTGCTTCACTTTATTATTACTGCTCTC-TATTATTGCTGCTTTAATTCAAATGTATCATG 194 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 TATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAG 191 consensus_11082#0 ACGCCTATCGACA--CACATCACACAAACACC--CGTC-AACTCACCTGAAACTCATCAA 295 consensus_11082#3 ACGCCTATCGACA--CACATCACACAAACACC--CGTC-AACTCACCTGAAACTCATCAA 262 consensus_11082#4 -----TCTCTCCA--T-CGCCAAACCAACACCACCGTC-TTCGCTCCTGAAACTCATCAA 51 consensus_11082#1 TCCCTTGTAGTCG--CGTTCTTGGTTTACGCGA-TATC-TTTTCCTCTAAAACATGTGTT 250 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 ACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTA 251 consensus_11082#0 CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAG 355 consensus_11082#3 CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAG 322 consensus_11082#4 CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTG 111 consensus_11082#1 TCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAA 310 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 GAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATA 311 consensus_11082#0 TACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTT 415 consensus_11082#3 TACACTCCAATTCAAAAATACACTCGCTC------------------------------- 351 consensus_11082#4 TACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTT 171 consensus_11082#1 CTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTAC 370 consensus_11082#5 ---------------------------------------GACGACGGATGCTTTATTTAC 21 consensus_11082#2 GTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATT--- 368 consensus_11082#0 CACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAAC 475 consensus_11082#3 -----------------------------------------------CTACAAAATAAAC 364 consensus_11082#4 CACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAAC 231 consensus_11082#1 TGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTG-CTTGGTTTTTATTAAATGTCT 429 consensus_11082#5 TGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTG-CTTGGTTTTTATTAAATGTCT 80 consensus_11082#2 CAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAA 428 ** *** consensus_11082#0 AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 535 consensus_11082#3 AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 424 consensus_11082#4 AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 291 consensus_11082#1 T--CTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCT 487 consensus_11082#5 T--CTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCT 138 consensus_11082#2 T---TAAATAGAT--GTAATGTAAAACAAACA-ACTGCAATAAATGCCAATTAATATATA 482 *** * * * * * consensus_11082#0 CAAACACAAAA-GTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGG 594 consensus_11082#3 CAAACACAAAA-GTCAG------------------------------------------- 440 consensus_11082#4 CAAACACAAAA-GTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGG 350 consensus_11082#1 CATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACC 547 consensus_11082#5 CATACTCTGCATACCACACACCC------------------------------------- 161 consensus_11082#2 TATATATATATGGATATATATATATATATATATGGAG----------------------- 519 * * consensus_11082#0 AAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT 654 consensus_11082#3 ------------------------------------------------------------ consensus_11082#4 AAACCGCGAATGTATGGACAAT-------------------------------------- 372 consensus_11082#1 CATCTCCTCCCTCTCTTCGCTCATTCT--------------------------------- 574 consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 ------------------------------------------------------------ consensus_11082#0 AACAACAACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACAT 714 consensus_11082#3 ------------------------------------------------------------ consensus_11082#4 ------------------------------------------------------------ consensus_11082#1 ------------------------------------------------------------ consensus_11082#5 ------------------------------------------------------------ consensus_11082#2 ------------------------------------------------------------ consensus_11082#0 GTCAAACAATCAAACCATCTGCAAAC 740 consensus_11082#3 -------------------------- consensus_11082#4 -------------------------- consensus_11082#1 -------------------------- consensus_11082#5 -------------------------- consensus_11082#2 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||