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Schistosoma mansoni
cluster # 11082 cluster # 11082       Sequences # 31       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11082#0 length = 740 sequences # 18  
consensus_11082#1 length = 574 sequences # 5  
consensus_11082#2 length = 519 sequences # 1  
consensus_11082#3 length = 440 sequences # 4  
consensus_11082#4 length = 372 sequences # 2  
consensus_11082#5 length = 161 sequences # 1  

consensusID : consensus_11082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 740
fasta sequence
                              [CAAACACAAACACAAAAGTCAGACATACAAGTGAC-GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCA--A-CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC-ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC-ACAAAAACTATACTCCCGTCTAGTCAGTACACT-CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA-ACACAAAAGTCAG-ACAT-CCAAGTG-ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACATGTCAAACAATCAAACCATCTGCAAAC]

[-] EMBL CD113329             [CAAACACAAACACAAAAGTCAGACATACAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACCATTCAACATTCACATAACAACAACAACAACAACAACAACACCA  C CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTTGATACAATTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAGCAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG                                                                                                                                                                                                ]
[+] EMBL CD196791             [                       CATCCAAGTGACTGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ATAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCACCGGCACgcgtcaatg                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD196756             [                           CAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ATAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCACCGGCACCGTCAACGCA ATAAAAACT                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD196417             [                           CAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACA  A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAGCCAACCACTCTTGTCACCGGCAGCGtcaat                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD085938             [                                aca GGAGGACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT      AACAACAACAACAACAACACCA  A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATTACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTTCACTCTCTCCATCGCCGAACCAACACCACCGTGTTCGCTCCTACAAAATGAACGAATCATACACAGAAACAACATATCACTAACTCGTCACAATAGACACACACGCTCGAACACAACNCA AAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCCCATAACAACAACCACAACAACAACACCAACACC                                                        ]
[+] EMBL CD119234             [                                     GAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCA  A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAAACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACA                                                                                                                                                                                                                                                        ]
[+] EMBL CD085921             [                                                   TTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT      AACAACAACAACAACAACACCA  A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATTACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCTAACCAACACCACCGTCTTCGCTCCTACATAATAAACGAATTACACACGAAAACAACGTATCACTAGCTCGTCTCATTAAACACACACGCTCAAACTGCC GCACCAAAGTCAGTACATCCCAAGTGTACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCCTGAAACTAATATC                                                                                                         ]
[-] EMBL CD140382             [                                                                                                     AATATCAACTATTCAACATTCACATTACCACAACAACAACACCAACAACAACA  A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD140384             [                                                                                                              TATTCAAAATTCACATTACAACAACAACAACACCAACAACTACA  A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD179582             [                                                                                                                                              gCAACAACACCA  C CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCTGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGAAACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG                                                                                                                                                                                                ]
[-] EMBL AI740237             [                                                                                                                                                                                   TCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACAAAAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCGACAAAAACTATACTCCCGTCTAGTCAGTACAATACAAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACA                                                                                                                                                                        ]
[+] EMBL CD186762             [                                                                                                                                                                                      ACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAA                                                                                                                                                                                                      ]
[-] EMBL CD123600             [                                                                                                                                                                                                   CAAACCATCTGCAAACACATCTACACAACTCAAATCGAATCACATCGCAACGCCTGTCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACGCAA ACACAAAAGTCAG ACAT ACAAGTG ACGGAGAACAACATCAATTCTCGAGGCAaagagagg                                                                                                                                              ]
[-] EMBL CD115752             [                                                                                                                                                                                                                        gACACGACTCAAATCAAATCACATCGCAACGCCGAGCGACACACATCAC ACAAACACCCGGCAACTCACCTGAAACTCATCAACCAACCACTCAAGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGAGACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGC                                                                                                                                           ]
[+] EMBL CD136092             [                                                                                                                                                                                                                                                                        C ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAA                                                                                               ]
[-] EMBL CD136067             [                                                                                                                                                                                                                                                                          ACAGACACCCGTCAACTCACCTGAGACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACATATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAAC                                                                                              ]
[+] EMBL CD129748             [                                                                                                                                                                                                                                                                                                                                                                                                                             ACACCTCTTCACAGTCCACTCTCTCCGTCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATCCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACAACACCACCGAAATACACTGCGAAAATCAACATGTCAAACAATCAAACCATCTGCAAAC]
[+] EMBL CD086565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tgCACTGACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACACCACCACCAAAATACACTGGGAAAATCAA                             ]


>consensus_11082#0 CAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTC AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT CACATAACAACAACAACAACAACAACAACACCAACACCAAAATACACTGCGAAAATCAAC AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA ACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAAC CACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACAC TCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAG TCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATT AAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAAC ACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCG CGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAAC AACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACATGTCAAA CAATCAAACCATCTGCAAAC



consensusID : consensus_11082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 574
fasta sequence
                              [GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAATTCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAAAACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT]

[+] EMBL CD196615             [GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAATTCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAAAACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTACATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATG                                                                                                                 ]
[+] EMBL CD062674             [                                                                                                                                                                                                                                                                                                     ATCCTCATATAAAATAACTTTGTTCTGTGTGTGTACGTGTGAAGAATGGTCTATGTGACGACGGATGCTTTATTTACTGAAGACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT]
[+] EMBL CD061971             [                                                                                                                                                                                                                                                                                                                           gtactagcGTGTGGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTAC GCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT]
[+] EMBL CD195222             [                                                                                                                                                                                                                                                                                                                                                             GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTC                                              ]
[+] EMBL CD195115             [                                                                                                                                                                                                                                                                                                                                                             GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTA                                                                                              ]


>consensus_11082#1 GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGT GTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAA CATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAAT TCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAA AACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCA TATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATG CTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTAT TAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTA TCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGAC TTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT



consensusID : consensus_11082#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence
                              [ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATATATATATATATATGGATATATATATATATATATATGGAG]

[+] EMBL CD075687             [ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATATATATATATATATGGATATATATATATATATATATGGAG]


>consensus_11082#2 ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAG ATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAA AACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTG GCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCA AAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGA CAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAA TTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATA GAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATA TATATATATATATGGATATATATATATATATATATGGAG



consensusID : consensus_11082#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 440
fasta sequence
                              [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAG]

[+] EMBL CD123456             [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCA ]
[+] EMBL CD123440             [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCA ]
[-] EMBL CD123397             [                                                                                            agcAACGGCAGCAGCAACATCAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAG]
[-] EMBL CD179650             [                                                                                                                                                                           AACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCTGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCACAAACGCAA ACACAAAagtcag                                                                   ]


>consensus_11082#3 GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCA TCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCA CCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCT ACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGT CAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAA AACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAAT AAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACA AACACAAACACAAAAGTCAG



consensusID : consensus_11082#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 372
fasta sequence
                              [TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAAT]

[+] EMBL CD119871             [TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAAT]
[-] EMBL CD192964             [            CAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGC               ]


>consensus_11082#4 TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACT CTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCA ATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCA CTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAAC ACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAA AAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAA TGTATGGACAAT



consensusID : consensus_11082#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence
                              [GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC]

[+] EMBL CD195175             [GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC]


>consensus_11082#5 GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGC TTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTC TGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11082#0      CAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTC 60
consensus_11082#3      ------------------------------GTGACGGAGAACAACATCAATTCTCGAGTC 30
consensus_11082#4      ------------------------------------------------------------
consensus_11082#1      ---------------------------------------------GAGAATTGATGTTGT 15
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      -------------------------------------------------ATCCGTTTTAT 11
                                                                                   

consensus_11082#0      AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT 120
consensus_11082#3      AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT 90
consensus_11082#4      ------------------------------------------------------------
consensus_11082#1      TCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATG 75
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      TACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTA 71
                                                                                   

consensus_11082#0      CACATAACAACAACAACAACAACAACAACACCAACACCAAAATACACTGCGAAAATCAAC 180
consensus_11082#3      CACATAACAACAACGACAACAACAAC---ACCACCACCAAAATACACTGCGAAAATCAAC 147
consensus_11082#4      ------------------------------------------------------------
consensus_11082#1      TAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGT 135
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      CTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTAC 131
                                                                                   

consensus_11082#0      AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA 240
consensus_11082#3      AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA 207
consensus_11082#4      ------------------------------------------------------------
consensus_11082#1      TTGCTTCACTTTATTATTACTGCTCTC-TATTATTGCTGCTTTAATTCAAATGTATCATG 194
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      TATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAG 191
                                                                                   

consensus_11082#0      ACGCCTATCGACA--CACATCACACAAACACC--CGTC-AACTCACCTGAAACTCATCAA 295
consensus_11082#3      ACGCCTATCGACA--CACATCACACAAACACC--CGTC-AACTCACCTGAAACTCATCAA 262
consensus_11082#4      -----TCTCTCCA--T-CGCCAAACCAACACCACCGTC-TTCGCTCCTGAAACTCATCAA 51
consensus_11082#1      TCCCTTGTAGTCG--CGTTCTTGGTTTACGCGA-TATC-TTTTCCTCTAAAACATGTGTT 250
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      ACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTA 251
                                                                                   

consensus_11082#0      CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAG 355
consensus_11082#3      CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAG 322
consensus_11082#4      CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTG 111
consensus_11082#1      TCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAA 310
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      GAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATA 311
                                                                                   

consensus_11082#0      TACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTT 415
consensus_11082#3      TACACTCCAATTCAAAAATACACTCGCTC------------------------------- 351
consensus_11082#4      TACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTT 171
consensus_11082#1      CTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTAC 370
consensus_11082#5      ---------------------------------------GACGACGGATGCTTTATTTAC 21
consensus_11082#2      GTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATT--- 368
                                                                                   

consensus_11082#0      CACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAAC 475
consensus_11082#3      -----------------------------------------------CTACAAAATAAAC 364
consensus_11082#4      CACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAAC 231
consensus_11082#1      TGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTG-CTTGGTTTTTATTAAATGTCT 429
consensus_11082#5      TGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTG-CTTGGTTTTTATTAAATGTCT 80
consensus_11082#2      CAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAA 428
                                                                       **   ***    

consensus_11082#0      AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 535
consensus_11082#3      AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 424
consensus_11082#4      AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 291
consensus_11082#1      T--CTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCT 487
consensus_11082#5      T--CTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCT 138
consensus_11082#2      T---TAAATAGAT--GTAATGTAAAACAAACA-ACTGCAATAAATGCCAATTAATATATA 482
                           ***              *    * *         * *                   

consensus_11082#0      CAAACACAAAA-GTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGG 594
consensus_11082#3      CAAACACAAAA-GTCAG------------------------------------------- 440
consensus_11082#4      CAAACACAAAA-GTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGG 350
consensus_11082#1      CATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACC 547
consensus_11082#5      CATACTCTGCATACCACACACCC------------------------------------- 161
consensus_11082#2      TATATATATATGGATATATATATATATATATATGGAG----------------------- 519
                        * *                                                        

consensus_11082#0      AAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT 654
consensus_11082#3      ------------------------------------------------------------
consensus_11082#4      AAACCGCGAATGTATGGACAAT-------------------------------------- 372
consensus_11082#1      CATCTCCTCCCTCTCTTCGCTCATTCT--------------------------------- 574
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      ------------------------------------------------------------
                                                                                   

consensus_11082#0      AACAACAACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACAT 714
consensus_11082#3      ------------------------------------------------------------
consensus_11082#4      ------------------------------------------------------------
consensus_11082#1      ------------------------------------------------------------
consensus_11082#5      ------------------------------------------------------------
consensus_11082#2      ------------------------------------------------------------
                                                                                   

consensus_11082#0      GTCAAACAATCAAACCATCTGCAAAC 740
consensus_11082#3      --------------------------
consensus_11082#4      --------------------------
consensus_11082#1      --------------------------
consensus_11082#5      --------------------------
consensus_11082#2      --------------------------
                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)