These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1353 fasta sequence [AATGACTGCAGATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA-TTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT-CCCTGTAATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGGTAGTGAAACT-AATAGTGT-ATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACTAATAGTGNTATGAAATCACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAGTTAAAATCATGGAAAACA] [-] EMBL CD183567 [AATGACTGCAGATGTTCTAAAAGCAAAGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGT ] [+] EMBL CD128405 [ ACTGCAGATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAGTTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCAC TTACTGGAGACTCTTTTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAAC ] [+] EMBL AI976805 [ GATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAAATCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA TTg ] [+] EMBL BF936427 [ GCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAAATCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGATTTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT CCCTGGTATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAACTtg ] [+] EMBL BF936953 [ GTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAAATCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA TTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT CCCTGTAATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGGTAGTGAAACTAAATAGTGT ATGAATCAACACATt ] [+] EMBL CD191803 [ TGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTTTTTAACCAGAAGTTTGTTTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGCTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTTTAAAGTCAATTGA TTTGGTTGCAATGAAAAAATTGGAGAACANAGTTAATGTCATCCCCTGTAATAGC AAATCAGATA ] [+] EMBL CD168479 [ GGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAATCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTt ] [+] EMBL CD168480 [ CTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAATCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA TTTGGTTGCAATGAAAA ] [-] EMBL CD187093 [ AAAGTCAATTGA TTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT CCCTGTAATAGCAAAATAAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACGGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACT AATAGTGTAATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTg ] [-] EMBL CD145643 [ GTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACT AATAGTGTAATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCCCTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTTGTGATAATGAGAAAATGTCTCTTCAGGAAACCTATGTAAAGCGTCGTGAGCTTCAAAGGAA ] [+] EMBL CD153218 [ CAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACTAATAGTGNTATGAAATCACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAGTTAAAATCATGGAAAACA] [+] EMBL CD131264 [ GACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGAcaaggaaa ] [+] EMBL CD130640 [ GTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTCCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAA ] [+] EMBL CD193254 [ GGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGC ] consensusID : consensus_11091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 469 fasta sequence [GCCGAGTTAACAGAAGAAGTTAAAA-TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTANCAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTC] [+] EMBL CD087366 [GCCGAGTTAATTCGATTATTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATTCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAgcgaaggt ] [+] EMBL CD153483 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTANCAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTC] [+] EMBL CD145607 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGGGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ] [+] EMBL CD153046 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ] [+] EMBL CD202276 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ] [-] EMBL CD145678 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTGCACTACGAAACTTATCGACGTCTACGCTTAATCTAAATGGGATTTCGTGATGATGAGAAAATGTCTCTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCTAAGGA ] [-] EMBL CD145396 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ] [-] EMBL CD145402 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ] [-] EMBL CD145444 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ] [-] EMBL CD145455 [ AGAAGAAGTTAAAA TCAATGGAAAATCAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTT ] [-] EMBL CD145660 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCCAGTAGAAAATGAAAATCCCTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGCGTGCACTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCTCTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCTAAGGAA ] [-] EMBL CD202477 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCGGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ] [-] EMBL CD202494 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGCGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ] [-] EMBL CD202533 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACATATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ] [+] EMBL CD153180 [ cgGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ] [+] EMBL CD087364 [ TTAAAAGTC ATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTAC ] consensusID : consensus_11091#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [GATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTTTTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAGGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAACTTGGCCTGCCATAAGCTA] [-] EMBL CD061163 [GATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTTTTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAGGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAACTTGGCCTGCCATAAGCTA] consensusID : consensus_11091#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [GAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGACAAGGAAATCTGACTATGAAAAAAAGGAAATAAACTATTTGACGAGAGTACAGCTAGTCTTCACATTACTTAATAATTCACTTTAGCACTATGATTTCCGTTTATTGCTTTTGTTAATCTCACTTCTCTTTTATAGATTAGTTCAATTTTTTTCCTG] [+] EMBL CD169829 [GAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGACAAGGAAATCTGACTATGAAAAAAAGGAAATAAACTATTTGACGAGAGTACAGCTAGTCTTCACATTACTTAATAATTCACTTTAGCACTATGATTTCCGTTTATTGCTTTTGTTAATCTCACTTCTCTTTTATAGATTAGTTCAATTTTTTTCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11091#0 AATGACTGCAGATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGG 60 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 GCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATT 120 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 CGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGAC 180 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 TCTATTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTT 240 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 AAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGA 300 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 GACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTA 360 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 TATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCA 420 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 AGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAG 480 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 TCTAAAGTCAATTGATTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCATCCC 540 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 TGTAATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAAT 600 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 CCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGC 660 consensus_11091#1 ------------------------------------------------------------ consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 TGGTAGTGAAACTAATAGTGTATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCA 720 consensus_11091#1 ------------------------------------------------GCCGAGTTAACA 12 consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 GAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTT 780 consensus_11091#1 GAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTT 72 consensus_11091#2 --------------------------GATTCGTGTTTAATA-TA-CTATGTG--TCGGTG 30 consensus_11091#3 -----------------------------------------------------------G 1 consensus_11091#0 CAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTG 840 consensus_11091#1 CAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTG 132 consensus_11091#2 AGACTGGAATTGGAAAGTCC-----ACTTTACTGGA-------GACTCTTTTTAACCAGA 78 consensus_11091#3 AAACTTGAAGAGAAGAAACGCT----TTTTGGAAGAGGA-AATAGCCGCTTTCGAACGTC 56 * * *** * * * *** ** * * consensus_11091#0 AATATGGAAGATTTACGTGAACGTACACATGGTGT-ACATTACGAAACTTATCGACGTCA 899 consensus_11091#1 AATATGGAAGATTTACGTGAACGTACACATGGTGT-ACATTACGAAACTTATCGACGTCA 191 consensus_11091#2 AGTTTG----ATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTG 134 consensus_11091#3 GGAA-GCAGCTTGCGGAACAAGCAAGACAAGGAAATCTGACTATGAAAAAAAGGAAATAA 115 * * * * ** * ** * consensus_11091#0 ACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACT-TCAGGAAACCTATG 958 consensus_11091#1 ACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACT-TCAGGAAACCTATG 250 consensus_11091#2 ACATATGATCTCAA-AGAAGCTAATGTTAGGCTTAAGTTAACGGT-AGTAGAGACTTGTG 192 consensus_11091#3 ACTATTTGACGAGAGTACAGCTAGTCTTCACATTACTTAATAATTCACTTTAGCACTATG 175 ** * * * * * * * * * * * ** consensus_11091#0 AAAAGCGTCGTGAGCTTCA-AAGGAAAGAATTACAACAAAAG--GAAGAAGAAATGAGAC 1015 consensus_11091#1 AAAAGCGTCGTGAGCTTCA-AAGGAAAGAATTACAACAAAAG--GAAGAAGAAATGAGAC 307 consensus_11091#2 GGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATA 252 consensus_11091#3 ATTTCCGTTTATTGCTTTT----GTTAATCTCACTTCTCTTTT-ATAGATTAGTTCAATT 230 ** * ** * * * ** * * consensus_11091#0 AAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGC 1075 consensus_11091#1 AAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGC 367 consensus_11091#2 ACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAACTTGGCC 312 consensus_11091#3 TTTTTCCTG--------------------------------------------------- 239 ** consensus_11091#0 TACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAG 1135 consensus_11091#1 TANCAACCAAATCTGAA------------------------------------------- 384 consensus_11091#2 TGCCAT---AAGCTA--------------------------------------------- 324 consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 AGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGG 1195 consensus_11091#1 ----------------------------------TTACAAA----------AGTTTA--- 397 consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 AACAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTA 1255 consensus_11091#1 ---AAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTA 454 consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 CTGATGATGAAGCTGTTAGTGAAACTAATAGTGNTATGAAATCACACATCCCATTCGCTG 1315 consensus_11091#1 CTGATGATGAAGCTC--------------------------------------------- 469 consensus_11091#2 ------------------------------------------------------------ consensus_11091#3 ------------------------------------------------------------ consensus_11091#0 TTGTGGGTAGCTCAGAAGAGTTAAAATCATGGAAAACA 1353 consensus_11091#1 -------------------------------------- consensus_11091#2 -------------------------------------- consensus_11091#3 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||