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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 827 fasta sequence
[TCGAGGCACGAATCGGCACGAGGGTTATCACCATAATATGTCATCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC-AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT-GACTACG-AG-GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG-ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT-CACCTATATCCTGAGGCTCA]
[+] EMBL CD083828 [TCGAGGCACGAATCGGCACGAGGGTTATCACCATAATATGTCATCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGA ]
[+] EMBL AI976539 [ TGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATANACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCT ]
[+] EMBL AI975942 [ TGGCTGCAAGCAGTATACTTCCACTTGGTCTTTACAATGTTGATGGTGGGCACCCGGCCGGTATATTTGACCGATTTAAAGGGGGTAAGCCCGAAGGTAGAAGGGAAAGAACCCACTTTATTATTTCATGGGTTCAAAAACCCTATAATTTTTGATATTCGATCGCGAACGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACANACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACA ]
[+] EMBL AI975870 [ TGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGCTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACATATCTCTTTTCGTCGAGAATTCT ]
[+] EMBL CD160852 [ AATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCT ]
[-] EMBL CD097947 [ TGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTG ]
[+] EMBL CD135224 [ ATTACTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGAAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGC ]
[-] EMBL CD145703 [ TAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGATTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGTAGCCCCACAAc ]
[+] EMBL CD069885 [ GCCATCTACTCTACCAAATA TTATCAGAACCTAGGTTTTAGACTACGCAGNGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACGTTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ]
[+] EMBL CD119348 [ tCCGTCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTTTGTTTTAGAGTGAATGAAGTATTTTACCCAACGAGCTTCATCGTTC ]
[-] EMBL CD069851 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTGGCCAACTTTCAAAAAATCGAAATAA CACC ]
[-] EMBL CD069897 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAAATCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTGCCAACTTTCAAAAAATCGAAA A CAACTATATCCTGAGGCTCA]
[-] EMBL CD069909 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTGCCAACTTTCAAAAAATCGAAATAT A CTATATCCTGAGGCTC ]
[-] EMBL CD069826 [ AAGATTTATCAGAACCTAGATTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTGCCAACTTTCAAAAAATCGAAATATACACC ]
[-] EMBL CD069874 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATGTCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCGTACCAACTTTCAAAAAATCGAAATAA CACC ]
[+] EMBL CD119421 [ AGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTTCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCTTTCTGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTC ]
[-] EMBL CD119480 [ GATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCG ]
[+] EMBL CD069805 [ attTTCATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ]
[+] EMBL CD069795 [ atttaTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ]
[+] EMBL CD069920 [ ttttaTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ]
[+] EMBL CD135210 [ ATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATT ]
[+] EMBL CD069821 [ CTAGGTTTT GACTACG AG GAACGTGTACTTACATCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ]
[+] EMBL CD069839 [ ATTACCACTGCGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ]
consensusID : consensus_11102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 501 fasta sequence
[GCCCGAACCTGAGGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG-AATTCTCAG-AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA-GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT-GTCTAAATCTTTCGGATCTTCCGGTGAA-GGTCTTA-TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA-TATCCCTGATGGTCAACATACACTCCTTAATTTA-CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTTGATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACGA]
[+] EMBL CD161875 [GCCCGAACCTGAGGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTTGATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACG ]
[+] EMBL CD161885 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAGGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTNTTTGATGTAAATGTATGAGTTGAGTGGTACCGATTGTACACG ]
[+] EMBL CD161953 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAGGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCATAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTTCCGCGAA GGTCTTATTTGAA TGATGCGAATCGAAGCTGCTGGAGATATTGCTTCCCAACTTT AAAAAATCGAAATATCACCTA TATCCTTGATGG CAACATACACTCCTTAANTTATCCTGCTGCACAATAAAGACTATTAGGTAATCCTGCTTTTTGATGGAAATGGATGAATTGAGTGGTACCCAATGGACAaca]
[+] EMBL CD161917 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTTGATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACG ]
[+] EMBL CD161933 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTTTTTCGGGCGAGAAATTCT AGAAACCAGTAAAAGCCAACCAGGTGGCTCAACAGGAAGCTGAACGTGCCCGATATTAAATAGAAAAGGGCTG ACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCANAAGCGGCAACATTACTGGTCT AATC TTCGGATCTTCCGGTGAAGGGTC TA TTTGATTGAGGCG ATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATTATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAG CTATTTG TTATCCTG TTTTTGATG AAATGTATGAGTTGAGTG TACCGACTGTACA ]
[+] EMBL CD161840 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTNTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCA ]
consensusID : consensus_11102#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[TTGCTACCCACTTCTCGTTATCACCATAATATGTCAGCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTCAAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGA]
[+] EMBL CD178980 [TTGCTACCCACTTCTCGTTATCACCATAATATGTCAGCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTCAAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGA]
consensusID : consensus_11102#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[ATAGCCTTGACACAAATCTCTTTCGGTCGAGATTTCCCAGAAGCAGTAGAACCCAAACAAGTTGCTCAACAGGAAGCTGAACTTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGTCAACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTAAAAAAAAAAAAAA]
[-] EMBL AI395671 [ATAGCCTTGACACAAATCTCTTTCGGTCGAGATTTCCCAGAAGCAGTAGAACCCAAACAAGTTGCTCAACAGGAAGCTGAACTTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGTCAACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTAAAAAAAAAAAAAA]
consensusID : consensus_11102#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 309 fasta sequence
[ACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAGGTGTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAGGATCGGGGTAGAC]
[-] EMBL CD135432 [ACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAGGTGTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAGGATCGGGGTAGAC]
[+] EMBL CD161828 [ GACCTTATAACTCAGCGAGAATTGGTCAGTCACAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGCTAGACGATATAGCCCTGACACAAAGCTCTTTCGGCCGAGAATTCTCAt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 TCGAGGCACGAATCGGCACGAGGGTTATCACCATAATATGTCATCGTCCTTGTTCCGTGG 60
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 TTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTA 120
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 CAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGA 180
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 TGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTCAAAAGCCTATTATTTTTGA 240
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 TATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGT 300
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 GAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCA 360
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 GAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAA 420
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------GCCCGAACCTGAGGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCA 54
consensus_11102#3 ------------------------------------------------------------
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 AGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCA 480
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 GAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATAT 114
consensus_11102#3 ----------------------------------------------------------AT 2
consensus_11102#4 ------------------------------------------------------------
consensus_11102#0 GAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATAT 540
consensus_11102#2 ---------------------------------------TTGCTACCCACTTCTCGTTAT 21
consensus_11102#1 AGCCCTGACACAA-ATCTCTTTCGGTCGAGAATTC--TCAGAAGCAGTA-GAAGCCAAAC 170
consensus_11102#3 AGCCTTGACACAA-ATCTCTTTCGGTCGAGATTTC--CCAGAAGCAGTA-GAACCCAAAC 58
consensus_11102#4 ------ACCAAAG-ATTTATCAGAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTT 53
consensus_11102#0 AGCCCTGACACAA-ATCTCTTTCGGTCGAGAATTC--TCAGAAGCAGTA-GAAGCCAAAC 596
consensus_11102#2 CACCATAATATGTCAGCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTG 81
* * * ** *
consensus_11102#1 AAGTTGCTCAACAGGAA---GCTGAACGTGCACGATATT--TAGTAGAAAAG--GCTGAA 223
consensus_11102#3 AAGTTGCTCAACAGGAA---GCTGAACTTGCACGATATT--TAGTAGAAAAG--GCTGAA 111
consensus_11102#4 CCATTAC-CACTGAGGT---GCTCAAAGCAGTGGTTGCT--CAGGTGTGATGCAAGTGAG 107
consensus_11102#0 AAGTTGCTCAACAGGAA---GCTGAACGTGCACGATATT--TAGTAGAAAAG--GCTGAA 649
consensus_11102#2 GCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTT 141
** ** * * * * * *
consensus_11102#1 CAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCA-ACATTACT 282
consensus_11102#3 CAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCA-ACATTACT 170
consensus_11102#4 CT-TATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAAT--GAAGATCTT-ACCCAACG 163
consensus_11102#0 CAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCA-ACATTACT 708
consensus_11102#2 ATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATT 201
* * * ** **** ** *
consensus_11102#1 GTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGC 342
consensus_11102#3 GTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGC 230
consensus_11102#4 AGCTTCATCGTTCGG-TATATTGTTAGACGA--TATAGCCCTGACACAAATCTCTTTCGG 220
consensus_11102#0 GTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGC 768
consensus_11102#2 ATTCCATGGGTTCAAA-AGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCC 260
*** * *** * * *
consensus_11102#1 TGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGT-C 401
consensus_11102#3 TGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGT-C 289
consensus_11102#4 TCGAGA-ATT-CTCAGAAGCAGT--AGAAGCCAAACAAGTTGCTCAA--CAGGAAGCT-G 273
consensus_11102#0 TGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATAT-CCTGAGGCT-C 826
consensus_11102#2 TGTGATGACTGGTT-CAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTC 319
* * * * * * * ** ** * *
consensus_11102#1 AACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTT 461
consensus_11102#3 AACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTAAAAAAAAAAAA 349
consensus_11102#4 AACGTGCACGAT---ATTTAGTAGAGGATCGGGGTAGAC--------------------- 309
consensus_11102#0 A----------------------------------------------------------- 827
consensus_11102#2 GCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGA-- 377
consensus_11102#1 GATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACGA 501
consensus_11102#3 AA-------------------------------------- 351
consensus_11102#4 ----------------------------------------
consensus_11102#0 ----------------------------------------
consensus_11102#2 ----------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||