These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 827 fasta sequence [TCGAGGCACGAATCGGCACGAGGGTTATCACCATAATATGTCATCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC-AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT-GACTACG-AG-GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG-ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT-CACCTATATCCTGAGGCTCA] [+] EMBL CD083828 [TCGAGGCACGAATCGGCACGAGGGTTATCACCATAATATGTCATCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGA ] [+] EMBL AI976539 [ TGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATANACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCT ] [+] EMBL AI975942 [ TGGCTGCAAGCAGTATACTTCCACTTGGTCTTTACAATGTTGATGGTGGGCACCCGGCCGGTATATTTGACCGATTTAAAGGGGGTAAGCCCGAAGGTAGAAGGGAAAGAACCCACTTTATTATTTCATGGGTTCAAAAACCCTATAATTTTTGATATTCGATCGCGAACGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACANACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACA ] [+] EMBL AI975870 [ TGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGCTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACATATCTCTTTTCGTCGAGAATTCT ] [+] EMBL CD160852 [ AATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCT ] [-] EMBL CD097947 [ TGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTG ] [+] EMBL CD135224 [ ATTACTCCATGGGTTC AAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGAAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGC ] [-] EMBL CD145703 [ TAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGATTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGTAGCCCCACAAc ] [+] EMBL CD069885 [ GCCATCTACTCTACCAAATA TTATCAGAACCTAGGTTTTAGACTACGCAGNGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACGTTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ] [+] EMBL CD119348 [ tCCGTCTACTCTACCAAAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTTTGTTTTAGAGTGAATGAAGTATTTTACCCAACGAGCTTCATCGTTC ] [-] EMBL CD069851 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTGGCCAACTTTCAAAAAATCGAAATAA CACC ] [-] EMBL CD069897 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAAATCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTGCCAACTTTCAAAAAATCGAAA A CAACTATATCCTGAGGCTCA] [-] EMBL CD069909 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTGCCAACTTTCAAAAAATCGAAATAT A CTATATCCTGAGGCTC ] [-] EMBL CD069826 [ AAGATTTATCAGAACCTAGATTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTGCCAACTTTCAAAAAATCGAAATATACACC ] [-] EMBL CD069874 [ AAGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATGTCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCGTACCAACTTTCAAAAAATCGAAATAA CACC ] [+] EMBL CD119421 [ AGATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTTCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCTTTCTGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTC ] [-] EMBL CD119480 [ GATTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCG ] [+] EMBL CD069805 [ attTTCATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ] [+] EMBL CD069795 [ atttaTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ] [+] EMBL CD069920 [ ttttaTTATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ] [+] EMBL CD135210 [ ATCAGAACCTAGGTTTT GACTACG AG GAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATT ] [+] EMBL CD069821 [ CTAGGTTTT GACTACG AG GAACGTGTACTTACATCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ] [+] EMBL CD069839 [ ATTACCACTGCGGTGCTCAAAGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAG ATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATAT CAC ] consensusID : consensus_11102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 501 fasta sequence [GCCCGAACCTGAGGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG-AATTCTCAG-AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA-GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT-GTCTAAATCTTTCGGATCTTCCGGTGAA-GGTCTTA-TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA-TATCCCTGATGGTCAACATACACTCCTTAATTTA-CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTTGATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACGA] [+] EMBL CD161875 [GCCCGAACCTGAGGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTTGATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACG ] [+] EMBL CD161885 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAGGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTNTTTGATGTAAATGTATGAGTTGAGTGGTACCGATTGTACACG ] [+] EMBL CD161953 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAGGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCATAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTTCCGCGAA GGTCTTATTTGAA TGATGCGAATCGAAGCTGCTGGAGATATTGCTTCCCAACTTT AAAAAATCGAAATATCACCTA TATCCTTGATGG CAACATACACTCCTTAANTTATCCTGCTGCACAATAAAGACTATTAGGTAATCCTGCTTTTTGATGGAAATGGATGAATTGAGTGGTACCCAATGGACAaca] [+] EMBL CD161917 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTTGATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACG ] [+] EMBL CD161933 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTTTTTCGGGCGAGAAATTCT AGAAACCAGTAAAAGCCAACCAGGTGGCTCAACAGGAAGCTGAACGTGCCCGATATTAAATAGAAAAGGGCTG ACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCANAAGCGGCAACATTACTGGTCT AATC TTCGGATCTTCCGGTGAAGGGTC TA TTTGATTGAGGCG ATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATTATCCCTGATGGTCAACATACACTCCTTAATTTA CCTGCTGCACAATAAAG CTATTTG TTATCCTG TTTTTGATG AAATGTATGAGTTGAGTG TACCGACTGTACA ] [+] EMBL CD161840 [ GAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAG AATTCTCAG AAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAAAA GGCTGAACAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACT GTCTAAATCTTTCGGATCTTCCGGTGAA GGTCTTA TTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTNTCAAAAAATCGAAATATCACCTA TATCCCTGATGGTCA ] consensusID : consensus_11102#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [TTGCTACCCACTTCTCGTTATCACCATAATATGTCAGCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTCAAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGA] [+] EMBL CD178980 [TTGCTACCCACTTCTCGTTATCACCATAATATGTCAGCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTCAAAAGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGA] consensusID : consensus_11102#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [ATAGCCTTGACACAAATCTCTTTCGGTCGAGATTTCCCAGAAGCAGTAGAACCCAAACAAGTTGCTCAACAGGAAGCTGAACTTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGTCAACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTAAAAAAAAAAAAAA] [-] EMBL AI395671 [ATAGCCTTGACACAAATCTCTTTCGGTCGAGATTTCCCAGAAGCAGTAGAACCCAAACAAGTTGCTCAACAGGAAGCTGAACTTGCACGATATTTAGTAGAAAAGGCTGAACAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCAACATTACTGTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGCTGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGTCAACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTAAAAAAAAAAAAAA] consensusID : consensus_11102#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 309 fasta sequence [ACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAGGTGTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAGGATCGGGGTAGAC] [-] EMBL CD135432 [ACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAAAGCAGTGGTTGCTCAGGTGTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATATAGCCCTGACACAAATCTCTTTCGGTCGAGAATTCTCAGAAGCAGTAGAAGCCAAACAAGTTGCTCAACAGGAAGCTGAACGTGCACGATATTTAGTAGAGGATCGGGGTAGAC] [+] EMBL CD161828 [ GACCTTATAACTCAGCGAGAATTGGTCAGTCACAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGCTAGACGATATAGCCCTGACACAAAGCTCTTTCGGCCGAGAATTCTCAt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 TCGAGGCACGAATCGGCACGAGGGTTATCACCATAATATGTCATCGTCCTTGTTCCGTGG 60 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 TTTGACAAAAGCCGGTGTTGGCTTGTTGGCTGCAAGCAGTATACTTCCACTTGTTCTTTA 120 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 CAATGTTGATGGTGGGCACCGCGCCGTTATATTTGACCGATTTAAAGGTGTTAGGCCCGA 180 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 TGTAAGAGGGGAAGGAACACACTTTATTATTCCATGGGTTCAAAAGCCTATTATTTTTGA 240 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 TATTCGATCGCGACCGAGGAATGTGCCTGTGATGACTGGTTCAAAAGATCTACAAACAGT 300 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 GAATATAACTTTGCGTATATTGTTTCGCCCTGAGCCATCTACTCTACCAAAGATTTATCA 360 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------------------------------------------------------------ consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 GAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTTCCATTACCACTGAGGTGCTCAA 420 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 ------GCCCGAACCTGAGGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCA 54 consensus_11102#3 ------------------------------------------------------------ consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 AGCAGTGGTTGCTCAATTTGATGCAAGTGAGCTTATAACTCAGCGAGAATTGGTCAGTCA 480 consensus_11102#2 ------------------------------------------------------------ consensus_11102#1 GAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATAT 114 consensus_11102#3 ----------------------------------------------------------AT 2 consensus_11102#4 ------------------------------------------------------------ consensus_11102#0 GAGAGTGAATGAAGATCTTACCCAACGAGCTTCATCGTTCGGTATATTGTTAGACGATAT 540 consensus_11102#2 ---------------------------------------TTGCTACCCACTTCTCGTTAT 21 consensus_11102#1 AGCCCTGACACAA-ATCTCTTTCGGTCGAGAATTC--TCAGAAGCAGTA-GAAGCCAAAC 170 consensus_11102#3 AGCCTTGACACAA-ATCTCTTTCGGTCGAGATTTC--CCAGAAGCAGTA-GAACCCAAAC 58 consensus_11102#4 ------ACCAAAG-ATTTATCAGAACCTAGGTTTTGACTACGAGGAACGTGTACTTCCTT 53 consensus_11102#0 AGCCCTGACACAA-ATCTCTTTCGGTCGAGAATTC--TCAGAAGCAGTA-GAAGCCAAAC 596 consensus_11102#2 CACCATAATATGTCAGCGTCCTTGTTCCGTGGTTTGACAAAAGCCGGTGTTGGCTTGTTG 81 * * * ** * consensus_11102#1 AAGTTGCTCAACAGGAA---GCTGAACGTGCACGATATT--TAGTAGAAAAG--GCTGAA 223 consensus_11102#3 AAGTTGCTCAACAGGAA---GCTGAACTTGCACGATATT--TAGTAGAAAAG--GCTGAA 111 consensus_11102#4 CCATTAC-CACTGAGGT---GCTCAAAGCAGTGGTTGCT--CAGGTGTGATGCAAGTGAG 107 consensus_11102#0 AAGTTGCTCAACAGGAA---GCTGAACGTGCACGATATT--TAGTAGAAAAG--GCTGAA 649 consensus_11102#2 GCTGCAAGCAGTATACTTCCACTTGTTCTTTACAATGTTGATGGTGGGCACCGCGCCGTT 141 ** ** * * * * * * consensus_11102#1 CAACATAAACTGGCTGCCATGATATCTGCAGAAGGTGACTCAGAAGCGGCA-ACATTACT 282 consensus_11102#3 CAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCA-ACATTACT 170 consensus_11102#4 CT-TATAACTCAGCGAGAATTGGTCAGTCAGAGAGTGAAT--GAAGATCTT-ACCCAACG 163 consensus_11102#0 CAACATAAACTGGCTGCCATTATATCTGCAGAAGGTGACTCAGAAGCGGCA-ACATTACT 708 consensus_11102#2 ATATTTGACCGATTTAAAGGTGTTAGGCCCGATGTAAGAGGGGAAGGAACACACTTTATT 201 * * * ** **** ** * consensus_11102#1 GTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGC 342 consensus_11102#3 GTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGC 230 consensus_11102#4 AGCTTCATCGTTCGG-TATATTGTTAGACGA--TATAGCCCTGACACAAATCTCTTTCGG 220 consensus_11102#0 GTCTAAATCTTTCGGATCTTCCGGTGAAGGTCTTATTGAATTGAGGCGAATCGAAGCTGC 768 consensus_11102#2 ATTCCATGGGTTCAAA-AGCCTATTATTTTTGATATTCGATCGCGACCGAGGAATGTGCC 260 *** * *** * * * consensus_11102#1 TGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGT-C 401 consensus_11102#3 TGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATATCCCTGATGGT-C 289 consensus_11102#4 TCGAGA-ATT-CTCAGAAGCAGT--AGAAGCCAAACAAGTTGCTCAA--CAGGAAGCT-G 273 consensus_11102#0 TGAAGATATTGCTTACCAACTTTCAAAAAATCGAAATATCACCTATAT-CCTGAGGCT-C 826 consensus_11102#2 TGTGATGACTGGTT-CAAAAGATCTACAAACAGTGAATATAACTTTGCGTATATTGTTTC 319 * * * * * * * ** ** * * consensus_11102#1 AACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTATCCTGTTTTTT 461 consensus_11102#3 AACATACACTCCTTAATTTACCTGCTGCACAATAAAGTCTATTTGTTTAAAAAAAAAAAA 349 consensus_11102#4 AACGTGCACGAT---ATTTAGTAGAGGATCGGGGTAGAC--------------------- 309 consensus_11102#0 A----------------------------------------------------------- 827 consensus_11102#2 GCCCTGAGCCATCTACTCTACCAAAGATTTATCAGAACCTAGGTTTTGACTACGAGGA-- 377 consensus_11102#1 GATGTAAATGTATGAGTTGAGTGTTACCGATTGTACACGA 501 consensus_11102#3 AA-------------------------------------- 351 consensus_11102#4 ---------------------------------------- consensus_11102#0 ---------------------------------------- consensus_11102#2 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||