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Schistosoma mansoni
cluster # 11121 cluster # 11121       Sequences # 35       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11121#0 length = 566 sequences # 3  
consensus_11121#1 length = 552 sequences # 31  
consensus_11121#2 length = 470 sequences # 1  

consensusID : consensus_11121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 566
fasta sequence
                              [GAACGG-TTGTTACCACGA-GGATGAA-GTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAATT]

[+] EMBL CD163122             [GAACGGATTGTTACCACGATGTATAAACCTTTGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACACGAAAGGCATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAA                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD078986             [                CGA GGATGAA GTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAAT ]
[-] EMBL CD073437             [                 GA GGATGAA GTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAATT]


>consensus_11121#0 GAACGGTTGTTACCACGAGGATGAAGTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTT ATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGC TCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAAC GTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTT TTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATG GAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAA GCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGT GACATGCTTATTTTGTGGAATAAATT



consensusID : consensus_11121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 31
consensus length = 552
fasta sequence
                              [CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAG-TT-A-GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT-TCATA-AACA-AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG-CTAAAC-GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG-CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGGGTTGGTGGAAACGTAATACTATGTGACATGCTATTTGTGGATAATTTTCTTGTAAAAAAAAAA]

[+] EMBL CD118505             [CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCATAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCC AGTAGCTCCTTCAAAAC NAAAGCTACCAAGATTACTCAAAAG                                                                           ]
[+] EMBL CD098465             [          CTATAGCGGTTGTTACCACGAGGATGAAGATTCA GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGAGTGTTAATACCCTT GACG AAAAATGTGAACGGTCCCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGTGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA                                                                               ]
[+] EMBL CD098479             [              AGCGGTTGTTACCACGAGGATGAAG TTCA GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGAGTGTTACT TCATA GACG AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCA                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD165390             [              AGCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGCGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGTGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTANAGCGATGCGTGACCAAGCCCATACGTGCAGCT AAGAAAAAC ANAGC AAAAGAAATGGA                                                                                                                                                          ]
[+] EMBL CD111085             [              AGCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGAGTTTTACT TCATA AACAGAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTCAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA                                                                               ]
[+] EMBL CD181135             [               GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCT                                                                        ]
[+] EMBL CD159346             [               GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAGAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGC                                                                                                                                                                                                                    ]
[+] EMBL CD148721             [               GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTCTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA                                                                               ]
[+] EMBL CD148661             [               GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA                                                                               ]
[+] EMBL CD185240             [               cCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAGAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGCTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAA                                                                                                                                                                     ]
[+] EMBL CD098427             [                 GGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCn                                                                               ]
[+] EMBL CD163098             [                 GGTTGTTACCACGAGGATGAAG TT ATGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCATAAG                                                                           ]
[+] EMBL CD163257             [                 GGTTGTTACCACGAGGATGAAG TT ATGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAG                                                                           ]
[+] EMBL CD110872             [                 GGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCCCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA                                                                               ]
[+] EMBL CD163538             [                  GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGG TTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACACAA                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD111224             [                  GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGA TACTCAA                                                                              ]
[+] EMBL CD202303             [                  GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGTTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAG                                                                                                                                                                                         ]
[+] EMBL CD163422             [                  GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGAC                                                                                                                                                                                                          ]
[-] EMBL CD111242             [                                           A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATATCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGACGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGA TACTCAA                                                                              ]
[+] EMBL CD153875             [                                                    GCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGGGTTGGTGGAAA                                                    ]
[+] EMBL SMAA33971            [                                                         TACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGTATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGAGAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTACCCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAG AAAAC AAAGC AAAAG AATGGAG AAAAGGTG AG AGGTCG AAAG AAAAGCCC  AGTAGCT CTTC AAAC AAAAGCTA CAAGATTACTC  AAGGCTGCT CTAGAG TGGTGGAAGCGTAATACTATGTGACATGCTATTTGTGGATAATTTTCTTGTAAAAAAAAAA]
[+] EMBL CD192483             [                                                                                             CGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAGGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAG                                                                                                                                                                                                                              ]
[+] EMBL CD139246             [                                                                                             gcgGCTATCCGTATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGACTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG TCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAA                                                                                                                                  ]
[+] EMBL CD111100             [                                                                                                             ATGGTCGTGAGTGGGAAT ACCTATGACG AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTTAACGGCAATC AAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG C                                                                                                                                                                                                    ]
[+] EMBL CD131200             [                                                                                                                        TTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAGAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCT                                                                                             ]
[-] EMBL CD111305             [                                                                                                                                                   GAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTANACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAA                                                                              ]
[+] EMBL CD180785             [                                                                                                                                                                TCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAGGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCT                                                                        ]
[+] EMBL CD136335             [                                                                                                                                                                                                          ACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAA                                                                                                                                                                                                       ]
[+] EMBL CD131487             [                                                                                                                                                                                                              AAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCGGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAA                                                                                                                                                                     ]
[-] EMBL CD143041             [                                                                                                                                                                                                                       CAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTG                                                                       ]
[+] EMBL CD110851             [                                                                                                                                                                                                                                                                                   TCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA                                                                               ]


>consensus_11121#1 CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAGTTAGAAGTGTGCTCTTACAGT GGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTT TACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATC AGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAA AAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAA ATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATA CGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAA AAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCT GCTCCTAGGGTTGGTGGAAACGTAATACTATGTGACATGCTATTTGTGGATAATTTTCTT GTAAAAAAAAAA



consensusID : consensus_11121#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [CACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGTTTAGTTCGCTTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATTTCTTTTTGCTTTTGTTTTTCTTTAGCTGCACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGCTTAGTTCGCTTTTTTACCAGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCG]

[+] EMBL CD133853             [CACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGTTTAGTTCGCTTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATTTCTTTTTGCTTTTGTTTTTCTTTAGCTGCACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGCTTAGTTCGCTTTTTTACCAGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCG]


>consensus_11121#2 CACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCA TGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGTTTAGTTC GCTTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATTTCTTTTTGCTTTTGTTTTTCT TTAGCTGCACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGT TTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGC TTAGTTCGCTTTTTTACCAGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAA CGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCT CATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11121#0      -------------GAACGGTTGTTACCACGAGGATGAAGTTAGAAGTGTGCTCTTACAGT 47
consensus_11121#1      CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAGTTAGAAGTGTGCTCTTACAGT 60
consensus_11121#2      ----------CACGTATGGCT-TGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATT 49
                                    *   ** * *   ****             *  * **   **  * *

consensus_11121#0      GGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTT 107
consensus_11121#1      GGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTT 120
consensus_11121#2      GCGTTTAGCCATGATTTCAGCCA-GACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTA 108
                       *  ****    * **    * ** *     * *        * ****      * **** 

consensus_11121#0      TACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATC 167
consensus_11121#1      TACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATC 180
consensus_11121#2      CACGTTTAGTTCGC----TTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATT---TC 161
                        ** *      *      * *  **   *** *  ****   * *  **  * *    **

consensus_11121#0      AGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAA 227
consensus_11121#1      AGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAA 240
consensus_11121#2      TTTTTGCTTTTGTTTTTCTTTAGC---TGCACGTATGGCTTG-GTCACGCATCGCTTTAC 217
                          * *    ** * * *   **    * **   * **  *  ** * *    * *  * 

consensus_11121#0      AAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAA 287
consensus_11121#1      AAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAA 300
consensus_11121#2      GAAC--TTCTGGCTTTTGATTGCGTTTAGCCATGATTTC-----AGCCAGACTTGCTCCT 270
                        * *        * * * *    *  *   *  * * *      *** ** ** ***   

consensus_11121#0      ATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATA 347
consensus_11121#1      ATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATA 360
consensus_11121#2      GCAATACCTCGA-GCACTCTTG-GTTACACGCT--TAGTTCGCTTTTTTACCAGCTCTTA 326
                          **  **  * *** **    *  * * * *  **   ** *   * ****   * **

consensus_11121#0      CGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAA 407
consensus_11121#1      CG-------------------------------------TGCAGCTAAAGAAAAACAAAA 383
consensus_11121#2      CAGTGGTTT-------------------------TAAAGTTTATCCGGGACATGGAAAAC 361
                       *                                      *  * *      *    *** 

consensus_11121#0      GCAAAAAGAA-ATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTC 466
consensus_11121#1      GCAAAAAGAA-ATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTC 442
consensus_11121#2      GCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTC 421
                       **   *     ** **       * *    *  **  *** *****     **    ***

consensus_11121#0      CTTC---AAAACAAAAAGCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAA 523
consensus_11121#1      CTTC---AAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGGGTTGGTGGAA 499
consensus_11121#2      ATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGG-TGCTCTACCG---------- 470
                        **    *** *  **  *     * ** *     * ** *****               

consensus_11121#0      AGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAATT------------- 566
consensus_11121#1      A-CGT-AATAC-TATGTGACATGCTATTTGTGGATAATTTTCTTGTAAAAAAAAAA 552
consensus_11121#2      --------------------------------------------------------
                                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)