These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1100 fasta sequence [GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACATCCC] [+] EMBL CD095355 [GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCTACATTTTTGATTTATATACAGTG ] [+] EMBL CD095341 [GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGGCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTG ] [-] EMBL CD094512 [ CAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTC ] [+] EMBL CD161291 [ ATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCATTGATCTTTGAATATGAACCCTCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGCGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCACTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCANGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGC ] [+] EMBL CD186160 [ TTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACATCCC] [+] EMBL CD186221 [ TTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACATCCC] [+] EMBL CD068623 [ tGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACA ] consensusID : consensus_11162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 26 consensus length = 1068 fasta sequence [TCACTTCCACAACAANAATGCAGTAAGTAATGTTGGTTATGTATTATGTTCAAATTTATAGATTTAACTATGATAAAATAACAAAAACTGTCTATATTTACAAAAACAATAAAAGATCACAATAATTAACGAACTACTTTATGAAAACAAGAACAAAGTTCATACTAAAACTCAAAAAAAGAAAAATCTTTGTACTCCACATCATAAATTTTACCTTTATTGTATCTTGTTCCTCATCATTTTCATTTTCTGATGGTAACATAGAAGTGGCCATCAACTGATTGAACCGAGTTTTCTTAGCTGCTTGTGCAGCGTACAACTGCCATTTGAATAGAGATAAAGGTGCTAAAGTAATATGAATTGGTAGTATTGGTGTAGTTTCATTCACTGGTTTATAATCTTCATTTAGATTCCAATAATCACTCAGATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCA--ATGCGTCCTCGGAGGTAAATATTGTACATCAGATGG-TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG-AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA-CTGAT-CTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTAAAAATATGGAACGCTTCACGATTNTGCGT] [-] EMBL CD124962 [TCACTTCCACAACAANAATGCAGTAAGTAATGTTGGTTATGTATTATGTTCAAATTTATAGATTTAACTATGATAAAATAACAAAAACTGTCTATATTTACAAAAACAATAAAAGATCACAATAATTAACGAACTACTTTATGAAAACAAGAACAAAGTTCATACTAAAACTCAAAAAAAGAAAAATCTTTGTACTCCACATCATAAATTTTACCTTTATTGTATCTTGTTCCTCATCATTTTCATTTTCTGATGGTAACATAGAAGTGGCCATCAACTGATTGAACCGAGTTTTCTTAGCTGCTTGTGCAGCGTACAACTGCCATTTGAATAGAGATAAAGGTGCTAAAGTAATATGAATTGGTAGTATTGGTGTAGTTTCATTCACTGGTTTATAATCTTCATTTAGATTCCAATAATCACTCAGATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAA ] [-] EMBL CD064275 [ ATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAAATTGATCC AAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTT GATGCCATGATGCGTCCTCGAAGttgg ] [-] EMBL CD166883 [ ATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAAATTGATCCAAAGGAACTGGGACAGAACC TTAACCCATGGAGAATGGTCATCTACTAAGTT ATAGTTAGATCTG ] [+] EMBL CD094923 [ CGATAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCA ATGAGTGGTCGGAGGTAAATATTGTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTAAAAATATGGAACGCTTCACGATTNTGCGT] [-] EMBL CD201187 [ caCGGAGGTAAATATTGTACATCAGATGG TGTTGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTATGGGATAAAGTACGACGTTTGTAACGCGTCCACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGTAGAAACCAGGTTTAACCAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [+] EMBL CD150698 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] [+] EMBL CD151592 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] [+] EMBL CD150708 [ GTACATCAGACGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGANTNAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] [+] EMBL CD144545 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGA TAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] [+] EMBL CD071791 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] [+] EMBL CD150711 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAAAAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACGTAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] [-] EMBL CD113187 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113205 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113231 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113188 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTCGGGAAACTGACTGCAATGAATTTAAGCTGATACTTTGAATca ] [-] EMBL CD150742 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAGCAAAATATACATGTATATACAATGAACCATTGAACATGAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD201146 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD201147 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD201168 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD201175 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113266 [ TACATCAGATGG TGTCGAAGAACCAGCTACTAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACAGGATAAACGACGGCGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD151589 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCCGTGTTTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113229 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG TGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113171 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [-] EMBL CD113172 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ] [+] EMBL CD113247 [ tgCATCAGATGGATGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ] consensusID : consensus_11162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 732 fasta sequence [ACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAGGTAGTGTCAGGCATTNTGAACTTTGAGTTTACAGGTATAAAACAGGGCTTATAATCAACA] [+] EMBL CD168847 [ACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAGGTAGTGTCAGGCATTNTGAACTTTGAGTTTACAGGTATAAAACAGGGCTTATAATCAACA] [+] EMBL CD168171 [ ACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGTAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAA ] consensusID : consensus_11162#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [TATCTGAATGATTATTGGAATCTAAATGAAGATTATAAACCAGTGAATGAAACTACACCAATACTACCAATTCATATTACTTTAGCACCTTTAT-CTCTATTCAAATGGCAGTTGTACGCTGCACAAACAGCTAAGAAAACTTGGTTCAATCAGTTGATGGCCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAGCACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAATTGTCCATAGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCCTTAGAAGGTCTCTCAGTTCGCTCTGTATTTTTCAATGTCTTCCAGTCATTCATTGTTGTGCTGTACGTACTTGATAACGATACCAATTTTGTTATAAAACTATCAGTTGTTTTTGGACTGTTAATTGAGATCTGGAAAATCAAGAAAGTCCCTTCTTTCAGATTTAATTATGATTCGTTGATATTCAATGTATTTCCACGTATTCATGTGGATTACCAATCATCATACGTAGAAAGTGATACCAAAAAAT] [+] EMBL CD201912 [TATCTGAATGATTATTGGAATCTAAATGAAGATTATAAACCAGTGAATGAAACTACACCAATACTACCAATTCATATTACTTTAGCACCTTTAT CTCTATTCAAATGGCAGTTGTACGCTGCACAAACAGCTAAGAAAACTTGGTTCAATCAGTTGATGGCCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAGCACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAATTGTCCATAGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCCTTAGAAGGTCTCTCAGTTCGCTCTGTATTTTTCAATGTCTTCCAGTCATTCATTGTTGTGCTGTACGTACTTGATAACGATACCAATTTTGTTATAAAACTATCAGTTGTTTTTGGACTGTTAATTGAGATCTGGAAAATCAAGAAAGTCCCTTCTTTCAGATTTAATTATGATTCGTTGATATTCAATGTATTTCCACGTATTCATGTGGATTACCAATCATCATACGTAGAAAGTGATACCAAAAAAT] [-] EMBL CD111889 [ ATTACTTTAGCACC TTATNCTCTATTCAAATGGCAGTTGTACGCTGCACAAACAGCTAAGAAAACTTGGTTCAATCAGTTGATGGCCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAGCACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAATTGTCCATTGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11162#0 ------------------------------------------------------------ consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 TCACTTCCACAACAANAATGCAGTAAGTAATGTTGGTTATGTATTATGTTCAAATTTATA 60 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 ------------------------------------------------------------ consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 GATTTAACTATGATAAAATAACAAAAACTGTCTATATTTACAAAAACAATAAAAGATCAC 120 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 -----------------------------------------GTGGTACGGGATAAACGAC 19 consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 AATAATTAACGAACTACTTTATGAAAACAAGAACAAAGTTCATACTAAAACTCAAAAAAA 180 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 GACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTAT 79 consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 GAAAAATCTTTGTACTCCACATCATAAATTTTACCTTTATTGTATCTTGTTCCTCATCAT 240 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 TGCCCGTATTTGGATCTGGTG-AGAAACCAGGTTTAACAAAATATACATGTATATACAAT 138 consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 TTTCATTTTCTGATGGTAACATAGAAGTGGCCATCAACTGATTGAACCGAGTTTTCTTAG 300 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 GAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATAT 198 consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 CTGCTTGTGCAGCGTACAACTGCCATTTGAATAGAGATAAAGGTGCTAAAGT---AATAT 357 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 GAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAA 258 consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 GAATTGGTAGTATTGG---TGTAGTTTCATTCACTGGTTTATAATCTTCATTTAGATTCC 414 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 AATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAA--TAGACAA 316 consensus_11162#2 ------------------------------------------------------------ consensus_11162#1 AATAATCACTCAGATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAA 474 consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 ATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGT 376 consensus_11162#2 --------------------------------------------------ACAAATAAAT 10 consensus_11162#1 ATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGT 534 consensus_11162#3 ---------------TATCTGAATGATTATTGGAATCTAAATGAAGATTATAAACCA-GT 44 ** * * consensus_11162#0 TAATAGTTAGATTTGGATGCCAATGAGTGGTCG--GAGGTAAATATTGTACATCAGATGG 434 consensus_11162#2 CCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCA 70 consensus_11162#1 TAATAGTTAGATTTGGATGCCAATGCGTCCTCG--GAGGTAAATATTGTACATCAGATGG 592 consensus_11162#3 GAATGAAACTACACCAATACTACCAATTCATAT-TACTTTAGCACCTTTATCTCTATTCA 103 ** * * * * * ** * ** * consensus_11162#0 TGTCG--AAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTT 492 consensus_11162#2 TCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGA-CAAAGTATGCTGTGATTAGATTT 129 consensus_11162#1 TGTCG--AAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTT 650 consensus_11162#3 AATGGC-AGTTGTACGCTGCACAAAC-AGCTAAGAA-AACTTGGTTCAATCAGTTGATGG 160 * * * * ** * * * ** * * * * * * *** consensus_11162#0 GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTG 552 consensus_11162#2 GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTG 189 consensus_11162#1 GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTG 710 consensus_11162#3 CCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAG 220 * * * * * * ** ** * * * *** * * * consensus_11162#0 TACT--TCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAA 610 consensus_11162#2 TACT--TCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAA 247 consensus_11162#1 TACT--TCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAA 768 consensus_11162#3 CACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAA-TTGTCCAT 279 *** ** * * **** ** ** * * * ** * ** ** ** consensus_11162#0 AATATACATG---TATATACAATGAACCATTGAACATAAGGTTGGGAAACTGA-----CT 662 consensus_11162#2 AATATACATG---TATATACAATGAACCATTGAACATAAGGTTGGGAAACTGA-----CT 299 consensus_11162#1 AATATACATG---TATATACAATGAACCATTGAACATAAGGTTGGGAAACTGA-----CT 820 consensus_11162#3 AGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCC 339 * * * ** * * ** * ** ** * * ** **** **** * consensus_11162#0 GCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATC 722 consensus_11162#2 GCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATC 359 consensus_11162#1 GCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATC 880 consensus_11162#3 TTAGAAGGTCTCTCAGTTCGCTCTGTATTTTTCAATGTCTTCCAGTCATTCATTGTTGTG 399 * * ** * * ** * *** ** * ** * * **** * consensus_11162#0 CCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAAT--GA 780 consensus_11162#2 CCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAAT--GA 417 consensus_11162#1 CCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAAT--GA 938 consensus_11162#3 CT-GTACGTACT-TGATAACGATACCAATTT--TGTTATAAAACTATCAGTTGTTTTTGG 455 * ****** * * ******* * * ** * *** * * * * consensus_11162#0 AATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGA 840 consensus_11162#2 AATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGA 477 consensus_11162#1 AATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGA 998 consensus_11162#3 ACTGTTA-ATTGAGATCTGGAAAATCAAGAAAGTCCCTTCTT--TCAGATTTAATTATGA 512 * **** ** * * * * *** ** *** * * * ** * ** consensus_11162#0 TTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAAC 900 consensus_11162#2 TTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAAC 537 consensus_11162#1 TTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTAAAAATATGGAACGCTTCAC 1058 consensus_11162#3 TTCGTTGATATT-CAATGTATTTCCACGTATTCATGTGGATTACCAATCATCATACGTAG 571 ** ** * * ** *** * * ** *** *** ** * consensus_11162#0 AAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCAT 960 consensus_11162#2 AAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCAT 597 consensus_11162#1 GATTNTGCGT-------------------------------------------------- 1068 consensus_11162#3 AAAGTGATACCAAAAAAT------------------------------------------ 589 * consensus_11162#0 TTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGC 1020 consensus_11162#2 TTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGC 657 consensus_11162#1 ------------------------------------------------------------ consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 ACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACA 1080 consensus_11162#2 ACGACCTCTGCAGAGGTAGTGTCAGGCATTNTGAACTTTGA-GTTTACAGGTATAAAACA 716 consensus_11162#1 ------------------------------------------------------------ consensus_11162#3 ------------------------------------------------------------ consensus_11162#0 GGGCTTATATTCAACATCCC 1100 consensus_11162#2 GGGCTTATAATCAACA---- 732 consensus_11162#1 -------------------- consensus_11162#3 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||