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Schistosoma mansoni
cluster # 11164 cluster # 11164       Sequences # 37       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11164#0 length = 427 sequences # 29  
consensus_11164#1 length = 370 sequences # 3  
consensus_11164#2 length = 298 sequences # 3  
consensus_11164#3 length = 191 sequences # 1  
consensus_11164#4 length = 134 sequences # 1  

consensusID : consensus_11164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 29
consensus length = 427
fasta sequence
                              [CGGCACGAG---GGAAACTACAGCAAGTAAAAGCCAAATCAATCATG-AATGTTCCAA-TAACTCGTG-AAG-A-AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT-ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG-AAGTGAAGAGTT-TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG-AATTAACAA-GAGCACTTACTGGTAG-ATATTAACCAGTTG-ACGTATAATTCTAT-T-G-TTTG-TTATATTTTACT-GTCAACATTTT-TATTTTACATGCACATT-G-AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG-TTTAT-TCTTATTCTAAAATAAAAATAATACGATTGTTAAAAAAAAAAAAAAAA]

[+] EMBL AA559448             [CGGCACGAG   GTAAACTACAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTC                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AA559470             [CGGCACGAGCTTGCAAACTACAGCAAGTAAAAGCCANATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCANTCGTCAAG AAGTGAAGAGTN TCATTTGTNAATTAGACAGTGATGGAGATGGACANATCAGTTTACCAG AATTANCAA GAGCNCTTACTGGTAG ATATCAACCAGTTG ACGTATAA                                                                                                                                                            ]
[+] EMBL AA559620             [        g   aGAAACTACAGCAAGTAAAAGCCAAANCAATCATG AATGTTCCAAGTAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAANAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATNCTAT T G TTTG TTATA                                                                                                                                       ]
[+] EMBL AA559457             [            gaAAACTACAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTGAAAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATNCTAT TGG TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT GAAAACCGCTTGTATTGTGATGAA                                                                         ]
[+] EMBL AA559632             [              AAACTACAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATNCTAT T G TNTG TTATA                                                                                                                                       ]
[+] EMBL AA559605             [                  TACAGCAAGTAAAAGCCAAATCAATCATGAAATGTTCCAA TAACTCGTG AAGAA AGTAACATGTATATNCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAGAAATTAACAA GAGCACTTACNGGTAG ATATTAACCAGTTG ACGTATAATNCTAT T G TNTG TTAT                                                                                                                                        ]
[+] EMBL AA559667             [                   ACAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATNCAATCAAATTGATAAAAATCCCAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAANAGTT NCATTNGTAAATTAGACNGTGATGGAGATGGACAANTCANTTTACCAG AATTAACAA NAGCACTTACNGGTAG ATATTAACCAGTNGAACGTANANTCCTATNG G TTTG TTATAat                                                                                                                                     ]
[+] EMBL AA559428             [                    CAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT                                                                                                                                ]
[+] EMBL AA559540             [                     AGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG ANAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGNTTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TNTG TTATATTTTACT GTCAA                                                                                                                          ]
[+] EMBL AA559511             [                     AGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATNCTAT T G TTTG TTATATTTTACT G                                                                                                                              ]
[+] EMBL AA559463             [                     AGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAGAATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTAC                                                                                                                                 ]
[+] EMBL AA559422             [                     AGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAGAA AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T GTTTTG TTATATTTTACT GTCAA                                                                                                                          ]
[+] EMBL AA559583             [                          GTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCNCAATGGATTTGTT ACAAATAGAGAATTANGTTCATATTTCAGAAAACATCATGCAAAATTCNNTCGTCAAG AAGTGAANAGTT NCATTTGTAAATTAGACNGTGATGGAGATGGACAAATCNNTTTACCAGAAATTAACAA GAGCACTTNCTGGTAG ATATTAACCNGTTG ACGTATAANTCTAC G G TTGG TTATATTTTACT GTCCACATTTTNTATT                                                                                                               ]
[+] EMBL AA559421             [                          GTAAAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAGAAATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTC                                                                                                                            ]
[+] EMBL AA559597             [                             AAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT NCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACNGGTAG ATATTAACCAGTTG ACGTATAATNCTAT T GTTTTG TTATATTTTACT GTCAACATTTT                                                                                                                    ]
[+] EMBL AA559478             [                             AAAGCCAAATCAATCATG AATGTTCCAA TAACTCGTG AAGAA AGTAACATGTATATTCAATCAAATTGATAAAAATCNCAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACNGGTAGAATATTAACCAGTNG ACGTATAATTCTAT T G TNTG TTATATTTTACT GTCANCNTTTT                                                                                                                    ]
[+] EMBL AA559600             [                              AAGCCAAATCAATCATG AATGTNCCAA TAACTCGTG AAG A AGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAAGGAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT G G TTTGTTTATATTTTACTGGTCAAC                                                                                                                         ]
[+] EMBL AA559509             [                                                                     acg t gGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGNTTTGTT ACAAATAGNGAATTAAGTTCATATTTCAGTAAACATCATGCAAAATTCAATCGTCAAG NAGTGAAGTGTT TCATTTGTAAATTAGACAGTGATGGAGTTGGACAAATCAGTTTACCAGNAATTAACAA GTGCACTTACTGGTAG NTATTAACCAGTTG NCGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATTGG AAACCGCTTGTATTGTGATGAAAAACGCACAGTGT                                                            ]
[+] EMBL SMAA43883            [                                                                                                         AAATCACAATGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAA                          ]
[-] EMBL AA999653             [                                                                                                                  TGGATTTGTT ACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAANTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACNGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAAT                         ]
[-] EMBL AA999504             [                                                                                                                   GGATTTGTTCCCAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTT TCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAAT                         ]
[-] EMBL AA999549             [                                                                                                                                                CATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAG AAGTGAAGAGTTNCCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAATACGAT                    ]
[+] EMBL AA559527             [                                                                                                                                                CATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGNAAGTGAANNGTT TCATTTGTAAATTAGACAGTGATGGAGNTGGACAAATCAGTTTACCAG AATTAACAA GAGCACTTACTGGTAN ATATTAACCAGTTG ACGTATAATNCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATGTTTTATNCCTTATNCTAAAATAAAAATAATACGA                     ]
[-] EMBL AA917194             [                                                                                                                                                                                                                                                     ccgaTAACGA GACTACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAATACGATTGTTAAAAAAAAAAAAAAAA]
[-] EMBL AA999418             [                                                                                                                                                                                                                                                            CAA GAGCACTTACTGGTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAAT                         ]
[+] EMBL AA559642             [                                                                                                                                                                                                                                                                            GTAG ATATTAACCAGTTG ACGTATAATTCTAT T G TTTG TTATATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAA                          ]
[-] EMBL AA999608             [                                                                                                                                                                                                                                                                                             TG ACGTAAAANTCTAT T G TTGG TAANATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATTAAAATAAT                         ]
[+] EMBL AA559737             [                                                                                                                                                                                                                                                                                                                            ATTTTACT GTCAACATTTT TATTTTACATGCACATT G AAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATCCTAAAATAAAAATAATACG                      ]
[+] EMBL AA559538             [                                                                                                                                                                                                                                                                                                                                     GTCAACATTTT TATTTTACATGCACATT GNAAACCGCTTGTATTGTGATGAAAAACGCACAGTGTCAATG TTTAT TCTTATTCTAAAATAAAAATAA                          ]


>consensus_11164#0 CGGCACGAGGGAAACTACAGCAAGTAAAAGCCAAATCAATCATGAATGTTCCAATAACTC GTGAAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTTACAA ATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAGTGA AGAGTTTCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAGAATTAA CAAGAGCACTTACTGGTAGATATTAACCAGTTGACGTATAATTCTATTGTTTGTTATATT TTACTGTCAACATTTTTATTTTACATGCACATTGAAACCGCTTGTATTGTGATGAAAAAC GCACAGTGTCAATGTTTATTCTTATTCTAAAATAAAAATAATACGATTGTTAAAAAAAAA AAAAAAA



consensusID : consensus_11164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 370
fasta sequence
                              [CTCGTGCCGCTCGTGCCGTGAAACTACAGCAAGTAAAAGCCAAATCAATCATG-AATGTTCCAATAACTCGTG-AAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAGATTTAACAAGAGCACTTACTGGTAGATATTAACCAGTTGACGTATAATNCCATTGTCTGGTTATATTTNACTGTCCCACNTTTTNATTTTNCNTGCCNCNTTGGAAACCGCTTGGTATTGTGATNAA]

[+] EMBL AA999220             [CTCGTGCCGCTCGTGCCGTGAAACTACAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAATAACTCGTG AAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAGATTTAACAAGAGCACTTACTGGTAGATATTAACCAGTTGACGTATA                                                                                 ]
[+] EMBL AA559785             [                        TACAGCAAGTAAAAGCCAAATCAATCATGAAATGTTCCAATAACTCGTGNAAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGATTTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTGATGGAGATGGACNAATCNGTTTACCAGAATTAACANGAGCCCTTACTGGTANATATNNNCCAGTTGACGTANCATNCCATTGTCTGGTTATATTTNACTGTCCCACNTTTTNATTTTNCNTGCCNCNTTGGAAACCGCTTGGTATTGTGATNAA]
[+] EMBL AA952835             [                                             CAATCATG AATGTTCCAATAACTCGTG AAGAAGAAACATATATATTCAATCAAATTGATAAAAATCACAATGGATTTGTTACAAATAGAGAATT  GTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAATAAGTGAAGAGTTTCATTTGTAAATTAGA ACTAAT GAGATG  CAAATCAAGTTACC                                                                                                                                 ]


>consensus_11164#1 CTCGTGCCGCTCGTGCCGTGAAACTACAGCAAGTAAAAGCCAAATCAATCATGAATGTTC CAATAACTCGTGAAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGAT TTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTC AAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTAC CAGATTTAACAAGAGCACTTACTGGTAGATATTAACCAGTTGACGTATAATNCCATTGTC TGGTTATATTTNACTGTCCCACNTTTTNATTTTNCNTGCCNCNTTGGAAACCGCTTGGTA TTGTGATNAA



consensusID : consensus_11164#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 298
fasta sequence
                              [CCTAACAACTTGNAAACTACAGCAAGTAAAAGCCAAATCAATCATG-AATGTTCCAATAACTCGTG-AAG-AAGTAACATGTATATNCAATCAAATTGATAAAAATCACAATGGGATTTG-TTACAAATAG-AGAATTAAGTTCATATTTCAG-AAAACATCATGCAAAATTCAATCGTCAAG-AAGTG-AAGAGTTTCATTT-GTAAATTAG-ACAGTG-ATGGAGAT-GGACAAATCAGTTTACCAGAAATTAACAAGAGCACTTAC-GGGTAGAATATTAACCAGTTGAACGTATAATNCTATTGTTT]

[+] EMBL AA559621             [CCTAACAACTTGNAAACTACAGCAAGTAAAAGCCAAATCAATCATG AATGTTCCAATAACTCGTG AAG AAGTAACATGTATATNCAATCAAATTGATAAAAATCACAAT GGATTTG TTACAAATAG AGAATTAAGTTCATNTTTCAG AAAACATCATGCAAAATTCAATCGTCAAG AAGTG AAGAGTTTCATTT GTAAATTAG ACAGTG ATGGAGAT GGACAAATCAGTTTACCAGAAATTAACAAGAGCACTTAC TGGTAGAATATTAACCAGTTG ACGTATAATTCTATTGTTT]
[+] EMBL AA559760             [   AACAACTTGNAAACTACAGCAAGTAAAAGCCAAATCAATCATGAAATGTTCCAATAACTCGTGAAAGAAAGTAACATGTATATNCAATCAAATTGATAAAAATCACAATGGGATTTGTTTACAAATAGAAGAATTAAGTTCATATTTCAGAAAAACATCATGCAAAATTCAATCGTCAAGAAAGTGAAAGNGTTTCATTTGGTAAATTAGAACAGTGAATGGAGATGGGACAAATCAGTTTACCAGAAATTAACAAGAGCNCTTACNGGGTAGAATATTAACCAGTTGAACGTATAATNCTATn    ]
[+] EMBL AA559788             [   AACAACTTG AAACTACAGCAAGTAAAAGCCAAATCAATCATG AATGTNCCAATAACTCGTG AAG AAGTAACATGTATATNCAATCAAATTGATAAAAATCACAATGGGATTTG TTACAAATAG AGAATTAAGTTCATATTTCAG AAAACATCATGCAAAATTCAATCGTCAAG AAGTG AANAGTTTCATTT GTAAATTAG ACAGTG ATGGAGAT GGACAAATCNGTTTACCAGAAATTAACAAGAGCACTTAC NGGTAGAATATTAACCAGTTGAACGTATAATNCTATT    ]


>consensus_11164#2 CCTAACAACTTGNAAACTACAGCAAGTAAAAGCCAAATCAATCATGAATGTTCCAATAAC TCGTGAAGAAGTAACATGTATATNCAATCAAATTGATAAAAATCACAATGGGATTTGTTA CAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGTCAAGAAG TGAAGAGTTTCATTTGTAAATTAGACAGTGATGGAGATGGACAAATCAGTTTACCAGAAA TTAACAAGAGCACTTACGGGTAGAATATTAACCAGTTGAACGTATAATNCTATTGTTT



consensusID : consensus_11164#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence
                              [AATTAGTTCATATTTCAAAAACATCATGCCAAATCTTTCGTCCAGAANTGAAGANTTCNTTTGTAAATTAGACGTGATGGAGATGGACAAATCAGTTTACAGAATTAACAAGAGCACTTACTGGTAGATATTNCCNGTTGACGTANAATCNATGGTNGTTATATTTCACTGTCAACNNTTTTAATTTACCT]

[+] EMBL AA559429             [AATTAGTTCATATTTCAAAAACATCATGCCAAATCTTTCGTCCAGAANTGAAGANTTCNTTTGTAAATTAGACGTGATGGAGATGGACAAATCAGTTTACAGAATTAACAAGAGCACTTACTGGTAGATATTNCCNGTTGACGTANAATCNATGGTNGTTATATTTCACTGTCAACNNTTTTAATTTACCT]


>consensus_11164#3 AATTAGTTCATATTTCAAAAACATCATGCCAAATCTTTCGTCCAGAANTGAAGANTTCNT TTGTAAATTAGACGTGATGGAGATGGACAAATCAGTTTACAGAATTAACAAGAGCACTTA CTGGTAGATATTNCCNGTTGACGTANAATCNATGGTNGTTATATTTCACTGTCAACNNTT TTAATTTACCT



consensusID : consensus_11164#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence
                              [AGTAAAAGCCAAATCAAATCATGAAATATTCCAATAACTCGTGAAGAAGTAACATAGTATATACAATCAAATTGATAAATCACATGGAATTGTCTAATGGATAGTCTATTCGAAACTCTGCAAATCTCGCGAGT]

[+] EMBL AA566154             [AGTAAAAGCCAAATCAAATCATGAAATATTCCAATAACTCGTGAAGAAGTAACATAGTATATACAATCAAATTGATAAATCACATGGAATTGTCTAATGGATAGTCTATTCGAAACTCTGCAAATCTCGCGAGT]


>consensus_11164#4 AGTAAAAGCCAAATCAAATCATGAAATATTCCAATAACTCGTGAAGAAGTAACATAGTAT ATACAATCAAATTGATAAATCACATGGAATTGTCTAATGGATAGTCTATTCGAAACTCTG CAAATCTCGCGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11164#0      ----------CGGCACGAGGGAAACTACAGCAAGTAAAAGCCAAATCAATCATGAATGTT 50
consensus_11164#3      ------------------------------------------------------------
consensus_11164#2      -------CCTAACAACTTGNAAACTACAGCAAGTAAAAGCCAAATCAATCATGAATGTTC 53
consensus_11164#1      CTCGTGCCGCTCGTGCCGTGAAACTACAGCAAGTAAAAGCCAAATCAATCATGAATGTTC 60
consensus_11164#4      ------------------------------------------------------------
                                                                                   

consensus_11164#0      CCAATAACTCGTGAAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAATGGA 110
consensus_11164#3      ------------------------------------------------------------
consensus_11164#2      CAATAACTCGTGAAGAAGTAACATGTATATNCAATCAAATTGATAAAAATCACAATGGGA 113
consensus_11164#1      CAATAACTCGTGAAGAAGTAACATGTATATTCAATCAAATTGATAAAAATCACAAT-GGA 119
consensus_11164#4      ------------------------------------------------------------
                                                                                   

consensus_11164#0      TTTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGT 170
consensus_11164#3      ----------------AATTA-GTTCATATTTCA-AAAACATCATGCCAAATCTT-TCGT 41
consensus_11164#2      TTTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGT 173
consensus_11164#1      TTTGTTACAAATAGAGAATTAAGTTCATATTTCAGAAAACATCATGCAAAATTCAATCGT 179
consensus_11164#4      -------------------------------------AGTAA-AAGCCAAATCAAATCAT 22
                                                            *  *  * ** ****    ** *

consensus_11164#0      CAAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTG-ATGGAGATGGACAAATCAGTTT 229
consensus_11164#3      CCAGAANTGAAGANTT-CNTTTGTAAATTAGAC-GTG-ATGGAGATGGACAAATCAGTTT 98
consensus_11164#2      CAAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTG-ATGGAGATGGACAAATCAGTTT 232
consensus_11164#1      CAAGAAGTGAAGAGTTTCATTTGTAAATTAGACAGTG-ATGGAGATGGACAAATCAGTTT 238
consensus_11164#4      GAAATATTCCAATAACTCGTGAAGAAGTAACATAGTATATACAATCAAATTGATAAATC- 81
                         *  * *  *      * *    ** * * *  **  **  *     *   ** * *  

consensus_11164#0      ACCAGAA-TTAACAAGAGCACTTACTGGTAGA-TATTAACCAGTTGA-CGTATAATTCTA 286
consensus_11164#3      AC-AGAA-TTAACAAGAGCACTTACTGGTAGA-TATTN-CCNGTTGA-CGTANAATCN-- 151
consensus_11164#2      ACCAGAAATTAACAAGAGCACTTACGGGTAGAATATTAACCAGTTGAACGTATAATNCTA 292
consensus_11164#1      ACCAGAT-TTAACAAGAGCACTTACTGGTAGA-TATTAACCAGTTGA-CGTATAATNCCA 295
consensus_11164#4      ACATGGAATTGTCTAATGGATAGTCTATTCGAAACTCTGCAAATCTCGCGAGT------- 134
                       **  *   **  * *  * *    *   * **   *   *   *    **          

consensus_11164#0      TTGT-TTGTTATATTTTACTGTCAACATTTTTATTTTACATGCACATTGAAACCGCTTGT 345
consensus_11164#3      ATGG-TNGTTATATTTCACTGTCAACNNTTTTAATTTACCT------------------- 191
consensus_11164#2      TTGT-TT----------------------------------------------------- 298
consensus_11164#1      TTGTCTGGTTATATTTNACTGTCCCACNTTTTNATTTTNCNTGCCNCNTTGGAAACCGCT 355
consensus_11164#4      ------------------------------------------------------------
                                                                                   

consensus_11164#0      ATTGTGATGAAAAACGCACAGTGTCAATGTTTATTCTTATTCTAAAATAAAAATAATACG 405
consensus_11164#3      ------------------------------------------------------------
consensus_11164#2      ------------------------------------------------------------
consensus_11164#1      TGGTATTGTGATNAA--------------------------------------------- 370
consensus_11164#4      ------------------------------------------------------------
                                                                                   

consensus_11164#0      ATTGTTAAAAAAAAAAAAAAAA 427
consensus_11164#3      ----------------------
consensus_11164#2      ----------------------
consensus_11164#1      ----------------------
consensus_11164#4      ----------------------
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)