These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 855 fasta sequence [CGCAACTTATTTATTTAAATCATAGCTTTAAGTAATCGGTTTATATAGGTTTCTCGGTTGCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG-GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG-TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA-ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC-GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC-TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTCAAAGACACAAACAGGCGCCAGGCAGAGGTA] [+] EMBL CD074392 [CGCAACTTATTTATTTAAATCATAGCTTTAAGTAATCGGTTTATATAGGTTTCTCGGTTGCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTT ] [-] EMBL BG931600 [ TCGGTTGCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGAa ] [+] EMBL CD117035 [ GCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATCCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCTCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATANTAGTCTG ] [+] EMBL CD117124 [ GCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACACCATGTTTGAAGTTGGCCCCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATCCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGA ] [+] EMBL CD117742 [ GCCAAAATCACCACCTTCAACAAAGTGTTCTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCCTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAA ] [+] EMBL CD117683 [ GCCAAAATCACCACCTTCAACAAAGTGTTCTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGA ] [-] EMBL CD194335 [ TGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGT ] [-] EMBL CD117206 [ TGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGT ] [-] EMBL CD083990 [ GCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACAGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTCCT ] [+] EMBL CD144414 [ TGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTANAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATCGCANCAACATCCCGTTGTTGATTT ] [+] EMBL CD144390 [ TGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTANAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTT ] [+] EMBL CD144436 [ TGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTACATGTACAAGGTCCTCAACGCATATTNAACC AGATGTCCAAGTTTTGTGTTGAATTA ] [-] EMBL CD118284 [ TCAACTTCAATGTCCATATAAAAGCATCAGCATGTTTAAAGTTTG GTCCAACTGTATATATTTCATGTCCAAGGTCCTCGACGCATATTAATCCAAGATGTCCAAG TGTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTT ACGACACAATTTTTAGAGTAGGATAACCCCAAGCGACGTACGGATCAATTATTAGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCT ] [+] EMBL CD147311 [ TGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATCGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTG ] [+] EMBL CD122711 [ AATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGCTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTAAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCGATTTTCGTCGTCT ] [+] EMBL CD121438 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTC ] [+] EMBL CD121447 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTC ] [+] EMBL CD121444 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTC ] [+] EMBL CD121487 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGACAT ] [+] EMBL CD121415 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGG ] [+] EMBL CD121491 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTT ] [+] EMBL CD121449 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTT ] [+] EMBL CD111495 [ AGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGC TCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATT ] [-] EMBL CD148768 [ GCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTCAAAGACACAAACAGGCGCCAGGCAGAGGTA] [-] EMBL CD111397 [ ATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTACTCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAG TTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCT ] [+] EMBL CD111308 [ TCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGC ] [-] EMBL CD111065 [ TCGCAC GACAAACGCGAGTTTTGCTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCat ] [-] EMBL CD184109 [ GTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCATAGCCATTCTGCGGTACTCATGCATGTATTTTCCCGC TCTATGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTATGCGAGATACTGTAATCAATGTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTTTGGCTTCATAGGTCTCTCAGAAGTAGCTGACTGAGCATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTACATTCAAAGACACAAACAGGCGCCAGGCAGAGGTA] [+] EMBL CD163639 [ CATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTTTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTCAAAG ] consensusID : consensus_11198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 781 fasta sequence [CACTATTTATTTAATCTAGCTTAAGTATCGGTTTAATAGGTTTTCGGTGCCNAAATCACACCCTTCANCAANGTGTTTCCTTTCTGCGAANNCCGCCACTAGATTGCTCACTGAAATGTCCATAGNAAAGCAACAGCATGTTGAAGTTTGGTCCAACTGTATATATNTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAGTTTG-TGTTGAATTAG-CTCATTTG--TTAAAGGGAGTCGTGTA-CCAT-GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGAGCCCTCGTGCCGAATTTTTGGCCTCGG] [-] EMBL CD080481 [CACTATTTATTTAATCTAGCTTAAGTATCGGTTTAATAGGTTTTCGGTGCCNAAATCACACCCTTCANCAANGTGTTTCCTTTCTGCGAANNCCGCCACTAGATTGCTCACTGAAATGTCCATAGNAAAGCAACAGCATGTTGAAGTTTGGTCCAACTGTATATATNTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAGTTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGAGCCCTCGTGCCGAATTTTTGGCCTCGG] [-] EMBL CD187051 [ ATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAGTTTGTTGTTGAATTAGCCTCATTTGGTTTAAAGGGAGTCGTGTACCCATGGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAA ] [-] EMBL CD134275 [ TTAAACCAAGATGTCCAAGTTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATCGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGGCTGAGTATCAGTTT ] [+] EMBL CD165848 [ CAAGATGTCCAAGTTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGC ] [-] EMBL CD165595 [ AAGTTTG CGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATA TCTTTTTTGGGCacgcag ] [+] EMBL CD154996 [ TTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCAT ] consensusID : consensus_11198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TGAATGTCCANAGAAAAACCAACAGCATGTTTGAAGNNNTGGNCCCACTGTATATATTTCATGTACNAGGTCCTCCNACGCATATTAAACCNAGATGTCCAAGTTTGTTGGTGAATTAGCTCATTTGTTAAAAGGGAGTCGTGTACCNTGGTACTTACCCAAATCCGCGTTTATAAATGAGTTGACGANCAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGNTCAATTANTCGAAGCATGTTAAGAGTTGCCTTANTTAATCGCACCAACATCCCGTTGTTGATTTTCCGG] [-] EMBL SM287 [TGAATGTCCANAGAAAAACCAACAGCATGTTTGAAGNNNTGGNCCCACTGTATATATTTCATGTACNAGGTCCTCCNACGCATATTAAACCNAGATGTCCAAGTTTGTTGGTGAATTAGCTCATTTGTTAAAAGGGAGTCGTGTACCNTGGTACTTACCCAAATCCGCGTTTATAAATGAGTTGACGANCAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGNTCAATTANTCGAAGCATGTTAAGAGTTGCCTTANTTAATCGCACCAACATCCCGTTGTTGATTTTCCGG] consensusID : consensus_11198#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [CTTATTTATTTATCTCTATAGCTTTTAGAATCGGTTTATATAGGTTTCTCGTTGCCAAAATCACCACCTTCAACAAAGTGGTTTCCCTTTTTGCGAAAACCGCCACTAGGATTGCTCAACTTGTATGTCCATAGAATAGCAACAGCATGTTTTTAAGTTTGGTCCAACTGTATATTTTTTTTGTACAAGGTCCTCAACGCATATTATCCCAAGATGTCCAAGTTTGTTTTGAAT] [+] EMBL SMAA40600 [CTTATTTATTTATCTCTATAGCTTTTAGAATCGGTTTATATAGGTTTCTCGTTGCCAAAATCACCACCTTCAACAAAGTGGTTTCCCTTTTTGCGAAAACCGCCACTAGGATTGCTCAACTTGTATGTCCATAGAATAGCAACAGCATGTTTTTAAGTTTGGTCCAACTGTATATTTTTTTTGTACAAGGTCCTCAACGCATATTATCCCAAGATGTCCAAGTTTGTTTTGAAT] consensusID : consensus_11198#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence [TNNTTCAAACTTGAATGTCCCATAGNAAAGNCGANCAGNCATGTTTGANNAAAAATCCAACCTGTATATATTTTCATGTACAAGGTTCCTCNACGCATATTAAAACCAAGATGTNCCAAGTTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTNGTGTAGCCATGGTACTTACAAAATGCCGCGTTTATAAATGAGTTGACGAACA] [-] EMBL AA559364 [TNNTTCAAACTTGAATGTCCCATAGNAAAGNCGANCAGNCATGTTTGANNAAAAATCCAACCTGTATATATTTTCATGTACAAGGTTCCTCNACGCATATTAAAACCAAGATGTNCCAAGTTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTNGTGTAGCCATGGTACTTACAAAATGCCGCGTTTATAAATGAGTTGACGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 ---------------CACTATTTATTTAATCTAGCTTAAGTATCGGTTTAATAGGTTTTC 45 consensus_11198#0 CGCAACTTATTTATTTAAATCATAGCTTTAAGTAATCGGTTTATATAGGTTTCTCGGTTG 60 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 --------------------------------------------------------TNNT 4 consensus_11198#1 GGTGCCNAAATCACACCCTTCANCAANGTGTTTCCTTTCTGCGAANNCCGCCACTAGATT 105 consensus_11198#0 CCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTG 120 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 -------TGAATGTCC-ANAGAAAAACCAAC--AGCATGTTTGAAGNNNTGGNCCCACTG 50 consensus_11198#4 TCAAACTTGAATGTCCCATAGNAAAGNCGANCAGNCATGTTTGANNAAAAATCCAACCTG 64 consensus_11198#1 GCTCACTGAAATGTCC-ATAGNAAAGC-AAC--AGCATGTT--GAAGTTTGGTCCAACTG 159 consensus_11198#0 CTCAACTTGAATGTCC-ATAGAAAAGC-AAC--AGCATGTTTGAAGTTTGGTCCAA-CTG 175 consensus_11198#3 -----CTTATTTATTTATCTCTATAGCTTTTAGAATCGGTTT-ATATAGGTTTCTCGTTG 54 * * * * *** * ** consensus_11198#2 TATATATTT-CATGTACNAGGTCCTCCNACGCATATTAAA-CCNAGATGTCCAAGTTTGT 108 consensus_11198#4 TATATATTTTCATGTACAAGGTTCCTCNACGCATATTAAAACCAAGATGTNCCAAGTTTG 124 consensus_11198#1 TATATATNT-CATGTACAAGGT-CCTCAACGCATATTAAA-CCAAGATGTCC-AAGTTTG 215 consensus_11198#0 TATATATTT-CATGTACAAGGT-CCTCAACGCATATTAAA-CCAAGATGTCC-AAGTTTG 231 consensus_11198#3 CCAAAATCACCACCTTCAACAAAGTGGTTTCCCTTTTTG--CGAAAACCGCCACTAGGAT 112 * ** ** * * * * * ** * * * * consensus_11198#2 TGGTGAATTAGCTCATTTGTTAAAAGGGAGTCGTGTA-CCNTGGTACTTACCCAAATCCG 167 consensus_11198#4 TGTTGAATTAGCTCATTTGTTAAA-GGGAGTNGTGTAGCCATGGTACTTACAAAATGCCG 183 consensus_11198#1 TGTTGAATTAGCTCATTTGTTAAA-GGGAGTCGTGTA-CCATGGTACTTACAAAAT-CCG 272 consensus_11198#0 TGTTGAATTAGCTCATTTGTTAAA-GGGAGTCGTGTA-CCATGGTACTTACAAAAT-CCG 288 consensus_11198#3 TGCTCAACTTGTATGTCCATAGAATAGCAACAGCATGTTTTTAAGTTTGGTCCAACTGTA 172 ** * ** * * * * ** * * * * * * ** consensus_11198#2 CGTTTAT---AAATGAGTTGACGANCAATTTTAAGACTAGGATAACCCCAAGCGACGTAC 224 consensus_11198#4 CGTTTAT---AAATGAGTTGACGAACA--------------------------------- 207 consensus_11198#1 CGTTTAT---AAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTAC 329 consensus_11198#0 CGTTTAT---AAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTAC 345 consensus_11198#3 TATTTTTTTTGTACAAGGTCCTCAACGCATATTATCCCAAGATGTCCAAGTTTGTTTTGA 232 *** * * ** * * * consensus_11198#2 GGNTCAATTANTCGAAGCATGTTAAGAGTTGCCTTANTTAATCGCACCAACATCCCGTTG 284 consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 GGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTG 389 consensus_11198#0 GGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTG 405 consensus_11198#3 AT---------------------------------------------------------- 234 consensus_11198#2 TTGATTTTCCGG------------------------------------------------ 296 consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 TTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTA 449 consensus_11198#0 TTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTA 465 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 ATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCC 509 consensus_11198#0 ATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCC 525 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 GTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGC 569 consensus_11198#0 GTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGC 585 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 ATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGT 629 consensus_11198#0 ATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGT 645 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 ATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGG 689 consensus_11198#0 ATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGG 705 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 AGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACG 749 consensus_11198#0 AGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACG 765 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------------------------------------ consensus_11198#4 ------------------------------------------------------------ consensus_11198#1 TCCGAGCCCTCGTGCCGAATTTTTGGCCTCGG---------------------------- 781 consensus_11198#0 TCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTC 825 consensus_11198#3 ------------------------------------------------------------ consensus_11198#2 ------------------------------ consensus_11198#4 ------------------------------ consensus_11198#1 ------------------------------ consensus_11198#0 AAAGACACAAACAGGCGCCAGGCAGAGGTA 855 consensus_11198#3 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||