These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 905 fasta sequence [TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATACCTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTATTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTTGTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT--GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA-CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGCAACTA] [+] EMBL CD148325 [TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATACCTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTATTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTTGTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGA ] [-] EMBL CD078504 [ AGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG ] [+] EMBL CD072976 [ AGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAA ] [+] EMBL CD097483 [ TAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD097482 [ TAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTA ] [-] EMBL BF440143 [ TCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCNCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAAC ] [+] EMBL CD141771 [ CTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCT ] [-] EMBL CD130724 [ CAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAAC ] [-] EMBL CD163035 [ AACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGCCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTG ] [-] EMBL CD132742 [ TTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGCAACTA] [-] EMBL CD148130 [ ACC TTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGCCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT ] [+] EMBL CD148059 [ CACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTGGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD147955 [ CACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [-] EMBL CD148078 [ ACGGACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC TTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTACCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAAC ] [+] EMBL CD148174 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAGGATT GAGAATCACTAATTAATGATCCACAGTTGTATTACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD148042 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD147985 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD147984 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD097437 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGGATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [+] EMBL CD147974 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [-] EMBL CD148084 [ CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCGGACGTCCTAGTCACGACAAATTTG ] [-] EMBL CD148082 [ CGAACTTTACCAGCGCGCGCAAGAGATCCATGGTCCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT ] [-] EMBL SMRAP143 [ TACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTTATACCGGAACNACGACATCGACAGATGTGTCACTGGACAGAGATNCCCAAGATTGGGAGAATCACT ] [+] EMBL CD148049 [ AGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ] [-] EMBL BG930427 [ GAGATCCATGGACCTTACTTCCTAATGCCGG ACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAgaa ] [-] EMBL CD148083 [ CTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAGCACGGGTATCAAACGACTTAACGAACACCTTCACGTTT ] [-] EMBL CD148170 [ GTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT ] [-] EMBL CD191944 [ TCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAAC ] consensusID : consensus_11204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 422 fasta sequence [AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTCTG] [-] EMBL CD084206 [AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTCTG] [+] EMBL CD135151 [ CTACTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATT ] [-] EMBL CD138949 [ TTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC ] [+] EMBL CD139070 [ ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ] [+] EMBL CD139021 [ ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ] [+] EMBL CD139022 [ ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ] [-] EMBL CD138968 [ CTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATCGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC ] [+] EMBL CD138963 [ ATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGCCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ] [+] EMBL CD134880 [ GTCGCTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATT ] consensusID : consensus_11204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACTTAACGAACACCTTCATGTTT] [-] EMBL CD148092 [CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACTTAACGAACACCTTCATGTTT] consensusID : consensus_11204#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence [ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT] [+] EMBL CD138958 [ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATAC 60 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 CTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTA 120 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 TTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTT 180 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 GTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGA 240 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 AATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCA 300 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 TTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACA 360 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 ------------------------------------------------------------ consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 GGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAA 420 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 --------AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC 52 consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 CTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC 480 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC 112 consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC 540 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT 172 consensus_11204#3 ------------------------ACTGCTTTGCTATGTGCTCGTC--TCTGTTGAGGAT 34 consensus_11204#0 TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT 600 consensus_11204#2 ------------------------------------------------------------ consensus_11204#1 GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 232 consensus_11204#3 AGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAA 94 consensus_11204#0 GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 660 consensus_11204#2 -----CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 55 *** ** ** ** *** ****** ************** ************ consensus_11204#1 CAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACT-AATT 291 consensus_11204#3 CAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACT-AATT 153 consensus_11204#0 CAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACT-AATT 719 consensus_11204#2 CAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATT 115 *** ******** ** ******* ************ *** ***** ******* **** consensus_11204#1 AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG 350 consensus_11204#3 AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAC 212 consensus_11204#0 AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG 778 consensus_11204#2 AATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAG 175 ******* **** ******** ********** ******** ******* ********* consensus_11204#1 TAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCT 410 consensus_11204#3 TAGAAT------------------------------------------------------ 218 consensus_11204#0 TAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGACACGGGTATCAAA 838 consensus_11204#2 TAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGA 235 ****** consensus_11204#1 CGTCCGATTCTG------------------------------------------------ 422 consensus_11204#3 ------------------------------------------------------------ consensus_11204#0 CGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCC 898 consensus_11204#2 CGACTTAACGAACACCTTCATGTTT----------------------------------- 260 consensus_11204#1 ------- consensus_11204#3 ------- consensus_11204#0 GCAACTA 905 consensus_11204#2 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||