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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[TGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCAGGTTTACTGGTGGGTGACCATCTCCATTGNGTGTGGCCAGTGAGGGAATGATTGTTTACAATGTGATGCGTTGTGATANGTGAGTGTTGTGTGTCTGTTTTGTTCGAGTGGTTTAATTTCATTGTA]
[+] EMBL CD155268 [TGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCAGGTTTACTGGTGGGTGACCATCTCCATTGNGTGTGGCCAGTGAGGGAATGATTGTTTACAATGTGATGCGTTGTGATANGTGAGTGTTGTGTGTCTGTTTTGTTCGAGTGGTTTAATTTCATTGTA]
consensusID : consensus_11350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 45 consensus length = 249 fasta sequence
[ACAGTGCCAGAGTCCAAACTGCTCAGAGTCCAAACAGTGCCACCCCTGAATTTAAGCCAGC-TGAAAGTACTCCGGAGGAAGCAGAGTT-CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTTTGG]
[-] EMBL CD198013 [ACAGTGCCAGAGTCCAAACTGCTCAGAGTCCAAACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAAAAGCATCATAATGCGAGGgcac ]
[+] EMBL CD197998 [ AACAGTGCCACCCCTGAATTTAAGCCAGA TGAAAGTACT CGGAGGAAGCAGAGCT CACATCAGCATCATAATGCGAGGCACAGCCCTTAACCACAGC ]
[+] EMBL CD198033 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGT ]
[+] EMBL CD197999 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGTGAGCAGAGCT CACAACAGGATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGA ]
[+] EMBL CD198029 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAGGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCCAGTGGGCACTGTTT ]
[+] EMBL CD198017 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGCAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTc ]
[+] EMBL CD198004 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD198014 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTGCTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD198026 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGCACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD141227 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGNGCACTGT ]
[+] EMBL CD198038 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD198003 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD197995 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCCAGTGTGCACT ]
[+] EMBL CD141291 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAG ACAACAGCATCATAATGCGAGGTACAGCCCTTAATCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD198040 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCA ]
[+] EMBL CD197994 [ AACAGTGCCACCCCTGAATTTAAGCCAGC AAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCA ]
[-] EMBL CD141390 [ ACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGTATCATAATGCGAGGTACAGCCCTTAGCCACAGCGCCTAGTGGGCAC ]
[-] EMBL CD198036 [ ACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGggcactgtt ]
[+] EMBL CD141221 [ GTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGAGGAAGCAGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTTTGG]
[+] EMBL CD198000 [ GTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGTAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCACCTAGTGGGCACT ]
[-] EMBL CD142264 [ GCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ]
[+] EMBL CD141008 [ cctcttCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ]
[+] EMBL CD141458 [ cctcttCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGAACAGCCCTTAACCACAGCGCCTAGGGGGaagag ]
[+] EMBL CD142190 [ CCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGTAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ]
[+] EMBL CD142273 [ cccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CGCAACAGCATCATAATGCGA GTACAGCCCTTAACCACA ]
[-] EMBL CD198393 [ acccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTA ]
[+] EMBL CD142270 [ gccccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ]
[+] EMBL CD198431 [ aagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ]
[+] EMBL CD142268 [ agtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ]
[-] EMBL CD142275 [ ccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ]
[-] EMBL CD198414 [ CCCCTGAACTTAGGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCGTAATGCGAGGTACAGCCCTTAACCACAG ]
[+] EMBL CD142269 [ CCCCTGAATTTAAGCCAGCGTGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ]
[-] EMBL CD142272 [ CCCGGAATTTAAGCCAGC GGAAAGAACT CGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ]
[-] EMBL CD198377 [ CCCTGAATTTA AGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ]
[+] EMBL CD141130 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGaaga ]
[+] EMBL CD198246 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACT ]
[+] EMBL CD142181 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAAAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGG ]
[+] EMBL CD198252 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACT ]
[+] EMBL CD142257 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGGGAGGTACAGCCCTTAACCACAGCGCCTAGTGG ]
[+] EMBL CD142258 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTG ACTGTTTGTAGTCTGctc ]
[+] EMBL CD198360 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGGGAGGTACAGCACTTAACCACAGCGCCTAGTGGGCAGTG ]
[+] EMBL CD198236 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCATTGTGTGC ]
[-] EMBL CD198374 [ TTAAGCCAGC TGAAAGTACTCCGGAGGAGGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGg ]
[+] EMBL CD198034 [ aacagtgccGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAG CCTTAACCACAGCGCCTAGTGGGCACTGT ]
[+] EMBL CD142266 [ AAGTACTCCGGAGGAACCAGAGTTACGCAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTa ]
consensusID : consensus_11350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence
[CTGTGGTTAAGGGCTGTACCTCAGGTCCTAACAGTGCCCACTAGGCGCTGTGGTTAAGGGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCCTCCGGAGTACTTTCAGCTGGCTTAA]
[+] EMBL CD198206 [CTGTGGTTAAGGGCTGTACCTCAGGTCCTAACAGTGCCCACTAGGCGCTGTGGTTAAGGGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCCTCCGGAGTACTTTCAGCTGGCTTAA]
consensusID : consensus_11350#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 101 fasta sequence
[AGCTGCCCCAAGTCACTAG-GCGCTGTGGTTAAG-GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAAA]
[+] EMBL CD142274 [AGCTGCCCCAAGTCACTAGTGCGCTGTGGTTAAGTGGCTGTACTTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ]
[+] EMBL CD198394 [ GCCCCAAGTCACTAG GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ]
[+] EMBL CD198367 [ gCCCAAGTCACTAG GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ]
[-] EMBL CD198385 [ CCCAAGT CTAG GCGCTGTGGTTAAG GGCTGT CCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCT GCTTAAA]
[+] EMBL CD142271 [ CAAGCCACTAG GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTT CTCCGGAGTAC TTCAGCTGGCTTAA ]
[+] EMBL CD198335 [ ACTAG GCGCTGTGGTGAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAATACTCTCAGCTGGCTTAA ]
[-] EMBL CD142267 [ CTAG GCGCTGTGGTCAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAAA]
[-] EMBL CD198287 [ TAG GCGCTGTGGTTAAG GGCTGTGCCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAAA]
[+] EMBL CD198417 [ G GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 TGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATT 60
consensus_11350#1 ------------------------------------------------------------
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 TTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTG 120
consensus_11350#1 ------------------------------------------------------------
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 GAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAG 180
consensus_11350#1 ------------------------------------------------------------
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 CAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGA 240
consensus_11350#1 ------------------------------------------------------------
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 GTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTT 300
consensus_11350#1 ------------------------------------------------------------
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 TCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAA 360
consensus_11350#1 -------------------------------------------ACAGTGCCAGAGTCCAA 17
consensus_11350#2 ------------------------------------------------------------
consensus_11350#3 ------------------------------------------------------------
consensus_11350#0 ATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGTTGTTGTTGTT 420
consensus_11350#1 ACTGCTCAGAGTCCAAACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAG 77
consensus_11350#2 ----------------CTGTGGTTAAGGGCT--GTACCTCAGGTCCTAACAGTGCCCACT 42
consensus_11350#3 ----------------------------------------AGCTGCCCCAAGT---CACT 17
consensus_11350#0 GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCAGGTTTACTGGTGGGTGACCATCTCCATT 480
consensus_11350#1 GAAGCAGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGT 137
* *
consensus_11350#2 AGGCGCTGT---GGTTAAGGG--CTGT-ACCTCGCATTATGATGCTGTTGTGAACT-CTG 95
consensus_11350#3 AGGCGCTGT---GGTTAAGGG--CTGT-ACCTCGCATTATGATGCTGTTGTGAACT-CTG 70
consensus_11350#0 GNGTGTGGC---CAGTGAGGGAATGAT-TGTTTACAATGTGATGC-GTTGTGATAN-GTG 534
consensus_11350#1 GGGCACTGTTTGGACTCTGGGCACTGTGAGTTCACAACAGCATCATAATGCGAGGTACAG 197
* * * *** * * ** ** ** ** *
consensus_11350#2 CTTCCCTCCGGAGTACTTT---CAGCTGGCTTAA------------------ 126
consensus_11350#3 CTTCC-TCCGGAGTACTTT---CAGCTGGCTTAAA----------------- 101
consensus_11350#0 AGTGTTGTGTGTCTGTTTTGTTCGAGTGGTTTAATTTCATTGTA-------- 578
consensus_11350#1 CCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTTTGG 249
* * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||