These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [TGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCAGGTTTACTGGTGGGTGACCATCTCCATTGNGTGTGGCCAGTGAGGGAATGATTGTTTACAATGTGATGCGTTGTGATANGTGAGTGTTGTGTGTCTGTTTTGTTCGAGTGGTTTAATTTCATTGTA] [+] EMBL CD155268 [TGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATTTTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTGGAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTTTCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAAATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCAGGTTTACTGGTGGGTGACCATCTCCATTGNGTGTGGCCAGTGAGGGAATGATTGTTTACAATGTGATGCGTTGTGATANGTGAGTGTTGTGTGTCTGTTTTGTTCGAGTGGTTTAATTTCATTGTA] consensusID : consensus_11350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 45 consensus length = 249 fasta sequence [ACAGTGCCAGAGTCCAAACTGCTCAGAGTCCAAACAGTGCCACCCCTGAATTTAAGCCAGC-TGAAAGTACTCCGGAGGAAGCAGAGTT-CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTTTGG] [-] EMBL CD198013 [ACAGTGCCAGAGTCCAAACTGCTCAGAGTCCAAACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAAAAGCATCATAATGCGAGGgcac ] [+] EMBL CD197998 [ AACAGTGCCACCCCTGAATTTAAGCCAGA TGAAAGTACT CGGAGGAAGCAGAGCT CACATCAGCATCATAATGCGAGGCACAGCCCTTAACCACAGC ] [+] EMBL CD198033 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGT ] [+] EMBL CD197999 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGTGAGCAGAGCT CACAACAGGATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGA ] [+] EMBL CD198029 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAGGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCCAGTGGGCACTGTTT ] [+] EMBL CD198017 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGCAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTc ] [+] EMBL CD198004 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD198014 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTGCTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD198026 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGCACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD141227 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGNGCACTGT ] [+] EMBL CD198038 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD198003 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD197995 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCCAGTGTGCACT ] [+] EMBL CD141291 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAG ACAACAGCATCATAATGCGAGGTACAGCCCTTAATCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD198040 [ AACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCA ] [+] EMBL CD197994 [ AACAGTGCCACCCCTGAATTTAAGCCAGC AAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCA ] [-] EMBL CD141390 [ ACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGTATCATAATGCGAGGTACAGCCCTTAGCCACAGCGCCTAGTGGGCAC ] [-] EMBL CD198036 [ ACAGTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGggcactgtt ] [+] EMBL CD141221 [ GTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGAGGAAGCAGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTTTGG] [+] EMBL CD198000 [ GTGCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGTAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCACCTAGTGGGCACT ] [-] EMBL CD142264 [ GCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ] [+] EMBL CD141008 [ cctcttCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ] [+] EMBL CD141458 [ cctcttCCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGAACAGCCCTTAACCACAGCGCCTAGGGGGaagag ] [+] EMBL CD142190 [ CCACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGTAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ] [+] EMBL CD142273 [ cccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CGCAACAGCATCATAATGCGA GTACAGCCCTTAACCACA ] [-] EMBL CD198393 [ acccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTA ] [+] EMBL CD142270 [ gccccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ] [+] EMBL CD198431 [ aagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ] [+] EMBL CD142268 [ agtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ] [-] EMBL CD142275 [ ccaagtACCCCTGAATTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ] [-] EMBL CD198414 [ CCCCTGAACTTAGGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCGTAATGCGAGGTACAGCCCTTAACCACAG ] [+] EMBL CD142269 [ CCCCTGAATTTAAGCCAGCGTGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACA ] [-] EMBL CD142272 [ CCCGGAATTTAAGCCAGC GGAAAGAACT CGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ] [-] EMBL CD198377 [ CCCTGAATTTA AGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAG ] [+] EMBL CD141130 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGaaga ] [+] EMBL CD198246 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACT ] [+] EMBL CD142181 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAAAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGG ] [+] EMBL CD198252 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACT ] [+] EMBL CD142257 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGGGAGGTACAGCCCTTAACCACAGCGCCTAGTGG ] [+] EMBL CD142258 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTG ACTGTTTGTAGTCTGctc ] [+] EMBL CD198360 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGGGAGGTACAGCACTTAACCACAGCGCCTAGTGGGCAGTG ] [+] EMBL CD198236 [ TTTAAGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCATTGTGTGC ] [-] EMBL CD198374 [ TTAAGCCAGC TGAAAGTACTCCGGAGGAGGCAGAGTT CACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGg ] [+] EMBL CD198034 [ aacagtgccGCCAGC TGAAAGTACTCCGGAGGAAGCAGAGTT CACAACAGCATCATAATGCGAGGTACAG CCTTAACCACAGCGCCTAGTGGGCACTGT ] [+] EMBL CD142266 [ AAGTACTCCGGAGGAACCAGAGTTACGCAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTa ] consensusID : consensus_11350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence [CTGTGGTTAAGGGCTGTACCTCAGGTCCTAACAGTGCCCACTAGGCGCTGTGGTTAAGGGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCCTCCGGAGTACTTTCAGCTGGCTTAA] [+] EMBL CD198206 [CTGTGGTTAAGGGCTGTACCTCAGGTCCTAACAGTGCCCACTAGGCGCTGTGGTTAAGGGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCCTCCGGAGTACTTTCAGCTGGCTTAA] consensusID : consensus_11350#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 101 fasta sequence [AGCTGCCCCAAGTCACTAG-GCGCTGTGGTTAAG-GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAAA] [+] EMBL CD142274 [AGCTGCCCCAAGTCACTAGTGCGCTGTGGTTAAGTGGCTGTACTTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ] [+] EMBL CD198394 [ GCCCCAAGTCACTAG GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ] [+] EMBL CD198367 [ gCCCAAGTCACTAG GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ] [-] EMBL CD198385 [ CCCAAGT CTAG GCGCTGTGGTTAAG GGCTGT CCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCT GCTTAAA] [+] EMBL CD142271 [ CAAGCCACTAG GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTT CTCCGGAGTAC TTCAGCTGGCTTAA ] [+] EMBL CD198335 [ ACTAG GCGCTGTGGTGAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAATACTCTCAGCTGGCTTAA ] [-] EMBL CD142267 [ CTAG GCGCTGTGGTCAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAAA] [-] EMBL CD198287 [ TAG GCGCTGTGGTTAAG GGCTGTGCCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAAA] [+] EMBL CD198417 [ G GCGCTGTGGTTAAG GGCTGTACCTCGCATTATGATGCTGTTGTGAACTCTGCTTCCTCCGGAGTACTTTCAGCTGGCTTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 TGAGAAGGCGACGGGCGAACTGAGAAATATGCAGTTGTGCTGATTCGCCGAGTTCTGATT 60 consensus_11350#1 ------------------------------------------------------------ consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 TTGTGCAAACTAGTGTTGGGACTGTGATTGATTGTGTTTGACAAATTGTAATTGTATTTG 120 consensus_11350#1 ------------------------------------------------------------ consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 GAGAAGAGATATTTACACTGTGTTTTAATGTGTTTTTGCTTTGTCAGGTGCGTGACCGAG 180 consensus_11350#1 ------------------------------------------------------------ consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 CAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGA 240 consensus_11350#1 ------------------------------------------------------------ consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 GTTGAGTAATCAACCGGGTGAGTGTGTGATTATATGCGTTGATGTGCATGTATGTGTTTT 300 consensus_11350#1 ------------------------------------------------------------ consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 TCTATGTTTGAGTATATGATGTGTTACCTACATTGTGTAATCAGTTTGAAATGAACTGAA 360 consensus_11350#1 -------------------------------------------ACAGTGCCAGAGTCCAA 17 consensus_11350#2 ------------------------------------------------------------ consensus_11350#3 ------------------------------------------------------------ consensus_11350#0 ATGATGCTGAATAATGATAATGTTAATATTGGAGTTTGTTTTATTGTTGTTGTTGTTGTT 420 consensus_11350#1 ACTGCTCAGAGTCCAAACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAG 77 consensus_11350#2 ----------------CTGTGGTTAAGGGCT--GTACCTCAGGTCCTAACAGTGCCCACT 42 consensus_11350#3 ----------------------------------------AGCTGCCCCAAGT---CACT 17 consensus_11350#0 GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCAGGTTTACTGGTGGGTGACCATCTCCATT 480 consensus_11350#1 GAAGCAGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGT 137 * * consensus_11350#2 AGGCGCTGT---GGTTAAGGG--CTGT-ACCTCGCATTATGATGCTGTTGTGAACT-CTG 95 consensus_11350#3 AGGCGCTGT---GGTTAAGGG--CTGT-ACCTCGCATTATGATGCTGTTGTGAACT-CTG 70 consensus_11350#0 GNGTGTGGC---CAGTGAGGGAATGAT-TGTTTACAATGTGATGC-GTTGTGATAN-GTG 534 consensus_11350#1 GGGCACTGTTTGGACTCTGGGCACTGTGAGTTCACAACAGCATCATAATGCGAGGTACAG 197 * * * *** * * ** ** ** ** * consensus_11350#2 CTTCCCTCCGGAGTACTTT---CAGCTGGCTTAA------------------ 126 consensus_11350#3 CTTCC-TCCGGAGTACTTT---CAGCTGGCTTAAA----------------- 101 consensus_11350#0 AGTGTTGTGTGTCTGTTTTGTTCGAGTGGTTTAATTTCATTGTA-------- 578 consensus_11350#1 CCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGGGCACTGTTTGG 249 * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||