These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAATTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACTTTATAAATATTTTCACACAGCACAGAAAGCAAATGATAAGCGTTTGGTAATAGTCTAAATATTATACACCACAAGGATACAAAGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTAAGTTAATGGGATACTATGACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAGCGGTATTCAACAAATGGACTAAAAC] [+] EMBL CD188798 [AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAATTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACTTTATAAATATTTTCACACAGCACAGAAAGCAAATGATAAGCGTTTGGTAATAGTCTAAATATTATACACCACAAGGATACAAAGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTAAGTTAATGGGATACTATGACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAGCGGTATTCAACAAATGGACTAAAAC] consensusID : consensus_1153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTCGAAATAAGACTATTAGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCAGCGATAGAATAACAGCTTCGTGTATGCGTGACGAGTGATACGTATGCATTGTACTATTATTGCACACGAATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAAACAATAATAATAATTTTTTCCTATT] [-] EMBL CD188500 [AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGATAATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTCGAAATAAGACTATTAGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCAGCGATAGAATAACAGCTTCGTGTATGCGTGACGAGTGATACGTATGCATTGTACTATTATTGCACACGAATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAAACAATAATAATAATTTTTTCCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1153#0 AAGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGA 60 consensus_1153#1 -AGGAGAAGAATTAGACTATTTCTAGCACAGATTGGAAATGAAGGATATACGTTGAAAGA 59 *********************************************************** consensus_1153#0 TAATTTTGATCGGTGCAGATATTATGGTGAAGATGTGAAAGTAACGAAGAATTTCTGCAA 120 consensus_1153#1 TAATTTTGATCGGTGCAGAAAATATGGTGAAGATGTGAAAGTAACGAAGAATTTC-GAAA 118 ******************* * ********************************* * ** consensus_1153#0 TTTAATTTTTTTGATGGGAGAAGAATAGTGAAAATACT---TTATAAATATTTTCACACA 177 consensus_1153#1 TAAGACTATT------AGGTAAAAGTTGTGCATACTCTGAGCGATTAAGAACTGCAATCA 172 * * * ** * ** * * *** * * ** ** ** * * ** ** consensus_1153#0 GCACAGAAAGCAAATGATAAGCGTTTG-GTAATAGTCTAAATATTATACACCACAAGGAT 236 consensus_1153#1 GCG-ATAGAATAACAGCTTCGTGTATGCGTGACGAGTGATACGT-ATGCATTGTA---CT 227 ** * * * ** * * * ** ** ** * * * * ** ** * * consensus_1153#0 ACAAAGACTAATAAATGCACTTCCAATTCATTTACTTATGCATTGTA-AGTTAATGGGAT 295 consensus_1153#1 ATTATTGCACACGAATGTAGTCATTAAAGCTTGAATTATAATTTGTCCAATTAATGGAA- 286 * * * * **** * * * ** * **** **** * ******* * consensus_1153#0 ACTATGACTCAGGGTTTTGATTATATTTGCACTCCATTAAGGGTTTATGGTAAGGACGAG 355 consensus_1153#1 ACAATAATAATAATTTTTTCCTATT----------------------------------- 311 ** ** * **** *** consensus_1153#0 CGGTATTCAACAAATGGACTAAAAC 380 consensus_1153#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||