cluster # 1179

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Schistosoma mansoni
cluster # 1179 cluster # 1179 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1179#0 length = 568 sequences # 1

consensus_1179#1 length = 288 sequences # 1

consensusID : consensus_1179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAATAAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTCGCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGACTACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACCACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTATCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGTAAAGCCATCAGACGACCTTGAAAACTTC]

[+] EMBL CD178323             [AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAATAAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTCGCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGACTACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACCACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTATCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGTAAAGCCATCAGACGACCTTGAAAACTTC]




>consensus_1179#0
AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATA
CGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAAT
AAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTC
GCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGAC
TACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACC
ACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATA
AAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCC
GAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTA
TCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGT
AAAGCCATCAGACGACCTTGAAAACTTC

consensusID : consensus_1179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [AAGCATCTGATTCAGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACCTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTAT]

[-] EMBL CD130793             [AAGCATCTGATTCAGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACCTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTAT]




>consensus_1179#1
AAGCATCTGATTCAGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCC
GTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAG
AAACCTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATT
TATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGC
AATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1179#0      AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATA 60
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      CGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAAT 120
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      AAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTC 180
consensus_1179#1      ----------------------------------------------------AAGCATCT 8
                                                                              *   

consensus_1179#0      GCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGAC 240
consensus_1179#1      GATTCAGAA--GGAAACAAAATAGACGGACTAACAGTATGG-CACACTAGC-ACCCGTAT 64
                      * *    *    ** * *** * *  *   *** *** **  * **  *** *     * 

consensus_1179#0      TACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACC 300
consensus_1179#1      GGATACGTCATGACTAATAGCCAAGCTCATC-AGTTTAAGAGC-----ATCATTCCAACT 118
                             *****   * *      *  * ** * *  *  ***     **  ******* 

consensus_1179#0      ACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATA 360
consensus_1179#1      AGAAAC-----------CTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATA 167
                      * **             *******************************************

consensus_1179#0      AAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCC 420
consensus_1179#1      AAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCC 227
                      ************************************************************

consensus_1179#0      GAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTA 480
consensus_1179#1      GAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTA 287
                      ************************************************************

consensus_1179#0      TCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGT 540
consensus_1179#1      T----------------------------------------------------------- 288
                      *                                                           

consensus_1179#0      AAAGCCATCAGACGACCTTGAAAACTTC 568
consensus_1179#1      ----------------------------