These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAATGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATGAAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGTTCAAATCTATAGAACATGGTTTATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATTGGTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTCTAACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAACACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTTATGGCGTGCATACCGGACCTGTTAATGCAAT] [+] EMBL CD124434 [CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAATGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATGAAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGTTCAAATCTATAGAACATGGTTTATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATTGGTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTCTAACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAACACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTTATGGCGTGCATACCGGACCTGTTAATGCAAT] consensusID : consensus_1184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [GTCAACAGCTTCAAAACTTTTATCTTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAATGCGTTGGACATCCATTTTTCCGTTTTCAGGACAATTTAACTATTTTAAGACTTTGATATCACTAAACATGTATCTAAGTCTTTAAAAGAAGAAACAAACTAAACTAACAATTGGAGAAACAGGTAGGGCTATTGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGTGTTTAGTTTTTTTACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA] [+] EMBL BG931334 [GTCAACAGCTTCAAAACTTTTATCTTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAATGCGTTGGACATCCATTTTTCCGTTTTCAGGACAATTTAACTATTTTAAGACTTTGATATCACTAAACATGTATCTAAGTCTTTAAAAGAAGAAACAAACTAAACTAACAATTGGAGAAACAGGTAGGGCTATTGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGTGTTTAGTTTTTTTACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1184#0 CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAA 60 consensus_1184#1 ------------------------------------------------------------ consensus_1184#0 TGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATG 120 consensus_1184#1 ------------------------------------GTCAACAGCTTCAAAACTTTTATC 24 * ** * * ** * *** ** consensus_1184#0 AAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGT-TCAAATCTATAGAACATGGT 179 consensus_1184#1 TTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAATGCGTTGGACATCCATTTTTCCGT 84 ** *** * ** * * * *** * ** * * * * * * ** consensus_1184#0 TTATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATT 239 consensus_1184#1 TTTCAGGACA--ATTTAACT--ATTTTAAGACTTTGATATCACTAAACATGTATCTAAGT 140 ** ** * * ** * *** * **** * ** * * * * * * * consensus_1184#0 GGTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTC 299 consensus_1184#1 CTTTAAAAGAAGAAACAAACTAAACTAACAATTG------GAGAAACAGGTAGGGCTAT- 193 * * * ** *** * ** * * *** ** * * * consensus_1184#0 TAACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAA 359 consensus_1184#1 TGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGTGTT-TAGTTTTTT 252 * * *** * ** * * * *** ** * *** * ** **** consensus_1184#0 CACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTT 419 consensus_1184#1 TACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA---------------------- 290 ** **** * * ** * ** * * * * consensus_1184#0 ATGGCGTGCATACCGGACCTGTTAATGCAAT 450 consensus_1184#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||