cluster # 120

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Schistosoma mansoni
cluster # 120 cluster # 120 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_120#0 length = 386 sequences # 1

consensus_120#1 length = 328 sequences # 1

consensusID : consensus_120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCCAAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTGTTTTGGGGATTAAGGCATCGTCATAT]

[+] EMBL CD155903             [AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCCAAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTGTTTTGGGGATTAAGGCATCGTCATAT]




>consensus_120#0
AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGA
CAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCC
AAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACT
TTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAAC
ACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTT
GGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTG
TTTTGGGGATTAAGGCATCGTCATAT

consensusID : consensus_120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCCTGAAACACACTCTATCCAAATTTGAGATAATCCACGTTCATTTAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTTGGGGAAATGCAACAAAAACTTCAAAACCTCAACTT]

[-] EMBL CD156064             [AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCCTGAAACACACTCTATCCAAATTTGAGATAATCCACGTTCATTTAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTTGGGGAAATGCAACAAAAACTTCAAAACCTCAACTT]




>consensus_120#1
AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGAC
AGGGAGTTACCCTGAAACACACTCTATCCAAATTTGAGATAATCCACGTTCATTTAAAAC
CACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTA
TCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATT
AATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTTGGGGAAA
TGCAACAAAAACTTCAAAACCTCAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_120#0      AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGA 60
consensus_120#1      -AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGA 59
                      ***********************************************************

consensus_120#0      CAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCC 120
consensus_120#1      CAGGGAGTTACCCTGA------------------------------AACACACTCTATCC 89
                     ************ ***                              **************

consensus_120#0      AAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACT 180
consensus_120#1      AAATTTGAGATAATCCACGTTCATTTAAAACCACACCTTTTATCTTAGAAATTATACACT 149
                     *********** ************* **********************************

consensus_120#0      TTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAAC 240
consensus_120#1      TTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAAC 209
                     ************************************************************

consensus_120#0      ACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTT 300
consensus_120#1      ACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTT 269
                     ************************************************************

consensus_120#0      GGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTG 360
consensus_120#1      GGAGAAGCTGTAATACAAAATTTTGGGGAAATGCAACAAAAACTTCAAAACCTCAACTT- 328
                     *********************** *********************************** 

consensus_120#0      TTTTGGGGATTAAGGCATCGTCATAT 386
consensus_120#1      --------------------------