These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGAGGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATTACTATGTATTATACATAACTTTTTGATTTCTTTCTCATTAGTTTTTATCTTTTGAACTGTTTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTATTCGAAAGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACTCTTTTTTATTTGATTCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTTTCTTTTGTTATTGTTGTTAGTGT] [+] EMBL CD140847 [GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGAGGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATTACTATGTATTATACATAACTTTTTGATTTCTTTCTCATTAGTTTTTATCTTTTGAACTGTTTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTATTCGAAAGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACTCTTTTTTATTTGATTCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTTTCTTTTGTTATTGTTGTTAGTGT] consensusID : consensus_1203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAAGCTGTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTATTCGAAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGATACATGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA] [-] EMBL SMAA28910 [AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAAGCTGTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTATTCGAAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGATACATGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1203#0 GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGA 60 consensus_1203#1 ------------------------------------------------------------ consensus_1203#0 GGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATT 120 consensus_1203#1 ------------------------------------------------------------ consensus_1203#0 ACTATGTATTATACATAACT-TTTTGATTTCTTTCTC-ATTAG--TTTTTATCTTTTGAA 176 consensus_1203#1 ---AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAA 57 * ********** ** ****** ***** * ***** **** ******** consensus_1203#0 -CTGTTTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTAT 235 consensus_1203#1 GCTGTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTAT 117 ******* ****** ***** ***************** *************** *** consensus_1203#0 TCGAAAGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGG 295 consensus_1203#1 TCGAAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGG 177 ******************* **************************************** consensus_1203#0 TTGTCAACCTTTCCAAATGACTC-TTTTTTATTTGATTCTATGTATGTTTACACCAATTG 354 consensus_1203#1 TTGTCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTG 237 ********************* * ************ *********************** consensus_1203#0 GTTACACTGATTATATTCTTTCTTCCTTTC-TTTTGTTATTGTTGTTAGTGT-------- 405 consensus_1203#1 GTTACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGAT 297 *************************** ** ********************* consensus_1203#0 ----------------------------------------------- consensus_1203#1 ACATGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA 344 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||