cluster # 1204

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Schistosoma mansoni
cluster # 1204 cluster # 1204 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1204#0 length = 574 sequences # 1

consensus_1204#1 length = 362 sequences # 1

consensusID : consensus_1204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGGGGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACATGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATACACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAAAAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTATCAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA]

[+] EMBL CD076200             [ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGGGGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACATGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATACACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAAAAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTATCAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA]




>consensus_1204#0
ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGG
GGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACA
TGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATAC
ACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAA
AAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAA
AAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTAT
CAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACA
AATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAA
TAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAG
ATACAGACAGATTAAGAATTCTATTTAGAAAAAA

consensusID : consensus_1204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAAT]

[-] EMBL AA999246             [ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAAT]




>consensus_1204#1
ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATG
ACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGA
AGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTG
AGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGA
AACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATA
GTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGA
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1204#0      ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGG 60
consensus_1204#1      ------------------------------------------------------------
                                                                                  

consensus_1204#0      GGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACA 120
consensus_1204#1      ------------------------------------------------------------
                                                                                  

consensus_1204#0      TGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATAC 180
consensus_1204#1      ------------------------------------------------------------
                                                                                  

consensus_1204#0      ACGGTACTAAGTAATTGTGACAATAACAATAA-AAAATAAAAACAAACTGAATTAGAAAA 239
consensus_1204#1      ----------------------ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTT 38
                                            ****** *   ******** **************    

consensus_1204#0      A-AAATATCAAGAAAGGACATGACGAAGAA-CGATAAAGAAAA-GACAAACAGAAAATAT 296
consensus_1204#1      TTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATAT 98
                        **************************** ******** ***  ******** ******

consensus_1204#0      GTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATT 356
consensus_1204#1      GTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGG 158
                      ** *************************** ***************************  

consensus_1204#0      CTATCAGAGAATGCTGTTGATAAACA-AATGAGGATAATTGCACAGCCATAGTGGATCAA 415
consensus_1204#1      AAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAA 218
                        * *************** * *    ***********  ********************

consensus_1204#0      AAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATA 475
consensus_1204#1      AAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATA 278
                      ******* ******* * ***************** ******************** ***

consensus_1204#0      TGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGA 535
consensus_1204#1      TTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGA 338
                      * **************** *****************************************

consensus_1204#0      ATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA 574
consensus_1204#1      ATAAGATACAGACAGATTAAGAAT--------------- 362
                      ************************