These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAGCAGGTATATATTCCTTCTGATCGAAGCAGACATCATGATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATATATGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATGAAACTTTAAATAGTTCATGTAATACATTAAAAACTGACACTACAGTTGAATATTCATTCCGTAATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC] [+] EMBL CD196171 [AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAGCAGGTATATATTCCTTCTGATCGAAGCAGACATCATGATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATATATGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATGAAACTTTAAATAGTTCATGTAATACATTAAAAACTGACACTACAGTTGAATATTCATTCCGTAATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC] consensusID : consensus_1205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [GAATTTTAAATCCAACTATACAACACAGTGTAACTAATTCGTCTTCAGCGGACACTGACAAATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATACTGACCAGTCCAACTAATACAAGTGTTGGTAGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAACTTGTTTATGCTCCAACTTATCGAAGTCAGTCATCAGCATTGGCGGATCAGAATGAAAAGTTGTACTATGCAGCTGAAATTAAGATTGATTTTGATCGAACTAAACACTTATCACCAGAT] [+] EMBL CD188827 [GAATTTTAAATCCAACTATACAACACAGTGTAACTAATTCGTCTTCAGCGGACACTGACAAATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATACTGACCAGTCCAACTAATACAAGTGTTGGTAGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGCCGTGCTATGGACATGCTGCGTGGTCAGAAACTTGTTTATGCTCCAACTTATCGAAGTCAGTCATCAGCATTGGCGGATCAGAATGAAAAGTTGTACTATGCAGCTGAAATTAAGATTGATTTTGATCGAACTAAACACTTATCACCAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1205#0 AGTCCACTTACATTTATAGCATATGTACAATATATGGATTATACTGGATTTAGC-CGTGC 59 consensus_1205#1 ---------------GAATTTTAAATCCAAC-TATACAACACAGTGTAACTAATTCGTCT 44 * ** * *** *** * * * ** * ** *** consensus_1205#0 TATGGACATGCTGCGTGGTCAGAAGCAGGT-ATATATTCCTTCTGATCGAAGCAGACATC 118 consensus_1205#1 TCAGCGGACACTGACAAATCAAAAGTATCTCATTTGATGAAGTCGAAAAAATCCAATATA 104 * * * *** *** *** * * ** * * ** ** * * ** consensus_1205#0 ATGATCGTTCGATCGTAATAGAAAGATGAGTAGTATTTGGAAAAATTCGGGAGATCGATA 178 consensus_1205#1 CTGACCAGTCCAAC-TAATACAAGTGTTGGTAG--TCCACTTACATTTA------TAGCA 155 *** * ** * * ***** ** * **** * * *** * consensus_1205#0 TATGAATGTTAGATCCTTCACAAAATCCTGATTGCTTGCCAGACTATATAAATAGCTATG 238 consensus_1205#1 TATGTACAATATATGGATTATA----CTGGATT--TAGCCGTGCTATGGACAT-GCTGCG 208 **** * ** ** * * * * **** * *** **** * ** *** * consensus_1205#0 AAACTTTAAA-TAGTTCATGT---AATACATTAAAAACTGACACTACAGTTGAATATTCA 294 consensus_1205#1 TGGTCAGAAACTTGTTTATGCTCCAACTTATCGAAGTCAGTCATCAGCATTGGCGGATCA 268 *** * *** *** ** ** ** * * ** * *** *** consensus_1205#0 TTCCGTAATCAATCTGGTTGTACAGAGGAGTATATTGGTGGGTTCGGAAAAATTGGC--- 351 consensus_1205#1 GAATGAAA--AGTTGTACTATGCAGCTGAAATTAAGATTGATTTTGATCGAACTAAACAC 326 * ** * * * * *** ** ** ** ** * ** * consensus_1205#0 ------------ consensus_1205#1 TTATCACCAGAT 338 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||