These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAATAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTAAAAGCAAGCATGAAAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGTTTTAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAGAACTCAAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTCACAAGAAACATATGAAGCTTGCCGACGTTCTAATGGATCAGCAATATGAGAAGCTGAAATCGCCTTATCCTGAAGATACTTTANGCAGGCT] [+] EMBL CD076212 [ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAATAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTAAAAGCAAGCATGAAAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGTTTTAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAGAACTCAAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTCACAAGAAACATATGAAGCTTGCCGACGTTCTAATGGATCAGCAATATGAGAAGCTGAAATCGCCTTATCCTGAAGATACTTTANGCAGGCT] consensusID : consensus_1208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [ACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCTAAGAACGTCACGATATCAAAGACAGGAGTTATGCAAACTTTTAAATTACTTACACCTAAATAACATACACAACAAATATAAAAGTAAGTTTTACGCAATCTATCATCTGATATTCTAATTCCTAAAATAAAAGCACTGTGAAAATGTTGGTGTTAATCTCCAGTAGCTTGCTCGTTTAATAATATCACTTTATTTTATACTATAGATTTTCAATGCATAAAACCTCCAAATCCTTTACAATAATAAATTCCTATTTTCGGTGTAAGGCTTAGATATGTATTTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGACACACTGTA] [-] EMBL CD083373 [ACAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTCGCCCCCAAACTTTAAAACTTCAAGGACACATTGGACATCCTGAACAGTCATAGATACCTAAGAACGTCACGATATCAAAGACAGGAGTTATGCAAACTTTTAAATTACTTACACCTAAATAACATACACAACAAATATAAAAGTAAGTTTTACGCAATCTATCATCTGATATTCTAATTCCTAAAATAAAAGCACTGTGAAAATGTTGGTGTTAATCTCCAGTAGCTTGCTCGTTTAATAATATCACTTTATTTTATACTATAGATTTTCAATGCATAAAACCTCCAAATCCTTTACAATAATAAATTCCTATTTTCGGTGTAAGGCTTAGATATGTATTTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGACACACTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1208#0 ATCTTTTTATTAAATTGAGATAATAAAAACTCAAAAATATTTCTATTTGATTAACAAGAA 60 consensus_1208#1 ------------------------------------ACAGTCCT-TTCGAC--ACAAGCA 21 * * * ** ** ** ***** * consensus_1208#0 TAAAATAAACAAAGCGGCACGACAATAAAAATAAAATTACTATTCGCCGGCACAATGGTA 120 consensus_1208#1 TATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGTGTTTGTGTAGCTAGTCGATA 81 ** ** * * *** * * ** ** ** * ** consensus_1208#0 AAAGCAAGCATGA--AAGACCAACAATGAATCTTTTTAATATGAAGTGAATATGCAATGT 178 consensus_1208#1 AAGTATTCCAAAACTAGTACTTTGTTCAGATGTTTCAGAAGTAATACGTGTTTCCAGTTC 141 ** ** * * ** ** *** * * * * * * ** * consensus_1208#0 ---TTTAGAATATAGTGCTTTAAAAATGCATATAGCTGGTCATTATACAATCTTCGTCAG 235 consensus_1208#1 GCCCCCAAACTTTAAAACTTCAAGGACACAT-----TGGACATCCTG-AACAGTCATAGA 195 * * * ** *** ** * *** *** *** * ** ** * consensus_1208#0 AACTCAAGAAATTCTTGAAAAAGTTTACATGATTGAGGATTGATTGGTCCGTCTGGACGA 295 consensus_1208#1 TACCTAAGAACGTCACGA-------TATCAAAGACAGGAGTTATGCAAACTTTTAAATTA 248 ** ***** ** ** ** * **** * ** * * * * * consensus_1208#0 CAGTCCTTTCGACACAAGCATATTGTACAAGGGATATTAGCCAAATTTGCAACAGATGGT 355 consensus_1208#1 CTTACACCTAAATA---ACATACACAACAAAT-ATAAAAGTAAGTTTTACGCAATCTATC 304 * * * * * **** **** *** ** * *** * * * consensus_1208#0 GTTTGTGTAGCTAGTCGATAAAGTATTCCAAAACTAGTACATTGTTCAGATGTTTCAGAA 415 consensus_1208#1 ATCTGATATTCTAAT----------TCCTAAAATAAAAGCACTGTGAAAATGTT-----G 349 * ** *** * * * **** * ** *** * ***** consensus_1208#0 GTAATACGTGTTTCCAGTTCGCCC-CCAAACTTTAAAACTTCAAGGACACATTGGACATC 474 consensus_1208#1 GTGTTAATCTCCAGTAGCTTGCTCGTTTAATAATATCACTTTATTT-TATACTATAGATT 408 ** ** ** * ** * ** ** **** * * * * * ** consensus_1208#0 CTGAACAGTCATAGATACCGTGCAAATTTTTGTGTTAGTGATAAAACGATGAATTTCTTC 534 consensus_1208#1 TTCAATG--CATAAA-ACC-TCCAAATCCTTTA--CAATAATAAATTCCT-ATTTTCGGT 461 * ** **** * *** * ***** ** * * ***** * * **** consensus_1208#0 ACAAGAAACATATGAAGCTTGCCGACG--TTCTAATGGATCAGCAATATGAGAAGCTGAA 592 consensus_1208#1 GTAAGGCTTAGATATGTATTTCCTATGATCTCTCATACATTAAGAACTCTAGGCAGTGAC 521 *** * ** ** ** * * *** ** ** * ** ** *** consensus_1208#0 ATCGCCTTATCCTGAAGATACTTTANGCAGGCT 625 consensus_1208#1 A-CACTGTA------------------------ 529 * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||