cluster # 1218

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Schistosoma mansoni
cluster # 1218 cluster # 1218 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1218#0 length = 374 sequences # 1

consensus_1218#1 length = 328 sequences # 1

consensusID : consensus_1218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [GAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTGTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCGTCCCTATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCGGCTTAGTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGAAACGTTTCAGATGT]

[+] EMBL CD130953             [GAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTGTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCGTCCCTATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCGGCTTAGTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGAAACGTTTCAGATGT]




>consensus_1218#0
GAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGT
TCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGA
CTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCT
TTACAACACGTGCGTAGTTTGTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCG
TCCCTATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCG
GCTTAGTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGA
AACGTTTCAGATGT

consensusID : consensus_1218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCATATTTTTTTAAATATATCCTTTAACGCTG]

[-] EMBL CD148868             [GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCATATTTTTTTAAATATATCCTTTAACGCTG]




>consensus_1218#1
GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATC
TCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGT
CCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCT
GTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACA
CGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCAT
ATTTTTTTAAATATATCCTTTAACGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1218#0      ----------------------------------------------------GAAGTATC 8
consensus_1218#1      GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATC 60
                                                                          ********

consensus_1218#0      TCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGT 68
consensus_1218#1      TCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGT 120
                      ************************************************************

consensus_1218#0      CCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCT 128
consensus_1218#1      CCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCT 180
                      ************************************************************

consensus_1218#0      GTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACA 188
consensus_1218#1      GTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACA 240
                      ************************************************************

consensus_1218#0      CGTGCGTAGTTT---GTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCGTCCCT 245
consensus_1218#1      CGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCAT 300
                      ************   *** *** ****  * ** *** *** ****  **    * ** *

consensus_1218#0      ATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCGGCTTA 305
consensus_1218#1      ATTTTTTTAAATATATCCTTTAACGCTG-------------------------------- 328
                      ***** ** ********* **** ****                                

consensus_1218#0      GTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGAAACGT 365
consensus_1218#1      ------------------------------------------------------------
                                                                                  

consensus_1218#0      TTCAGATGT 374
consensus_1218#1      ---------