These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACTTGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTGGTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATATGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGAGTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTGCTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATGTAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTATTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAATTAAAATCAACTAATTTTAATAATTTAGGTGA] [+] EMBL BF936052 [CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACTTGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTGGTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATATGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGAGTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTGCTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATGTAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTATTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAATTAAAATCAACTAATTTTAATAATTTAGGTGA] consensusID : consensus_1335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 92 fasta sequence [ACTTGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCAT] [+] EMBL BF936053 [ACTTGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1335#0 CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACT 60 consensus_1335#1 ---------------------------------------------------------ACT 3 *** consensus_1335#0 TGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAA 120 consensus_1335#1 TGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATAAAA 63 ****** ****** ******** ***** **** *** ******************** consensus_1335#0 AGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTG 180 consensus_1335#1 AGAAAATTTGTCTGCTTAATGCTTTGCAT------------------------------- 92 ***************************** consensus_1335#0 GTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATA 240 consensus_1335#1 ------------------------------------------------------------ consensus_1335#0 TGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGA 300 consensus_1335#1 ------------------------------------------------------------ consensus_1335#0 GTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTG 360 consensus_1335#1 ------------------------------------------------------------ consensus_1335#0 CTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATG 420 consensus_1335#1 ------------------------------------------------------------ consensus_1335#0 TAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTA 480 consensus_1335#1 ------------------------------------------------------------ consensus_1335#0 TTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAA 540 consensus_1335#1 ------------------------------------------------------------ consensus_1335#0 TTAAAATCAACTAATTTTAATAATTTAGGTGA 572 consensus_1335#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||