cluster # 137

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Schistosoma mansoni
cluster # 137 cluster # 137 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_137#0 length = 512 sequences # 1

consensus_137#1 length = 287 sequences # 1

consensusID : consensus_137#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [AAAAACAATCAACACATAATCAACCCAACACACAATATCCCACATTCACACACACACACACACACAAACACACTCCTTCATCAACATGTAGACAGAAAATGGAACACGACTACGCAAATCAACATCGTCGTCCAACGAGAAATCTGTCCAACCATCAATGTCACTCTCATTACACCCACACATATGTTAACAAACAACAAGTGGACTGGTTGAGAGTACTTACATGCATTACACACACTAGAACATCACAACACACACAACACACACAACCTGAACAACGGAAACATAACAGGGAACACCACTCCTCCCCATAACCATGATTCACCAAACATTCAAACACCACTATCACAACGAAAAACAATCAACACATAATCAACCCAACACACTATATCCCACATTCACACACACACACACACAAACACACACAACCTGAACAACGGAAACATAGCAGGGAACACCACTCCTCCCCATAACCATCATTCACCAAAAATTCAAACACCACCATTACAACG]

[+] EMBL CD066079             [AAAAACAATCAACACATAATCAACCCAACACACAATATCCCACATTCACACACACACACACACACAAACACACTCCTTCATCAACATGTAGACAGAAAATGGAACACGACTACGCAAATCAACATCGTCGTCCAACGAGAAATCTGTCCAACCATCAATGTCACTCTCATTACACCCACACATATGTTAACAAACAACAAGTGGACTGGTTGAGAGTACTTACATGCATTACACACACTAGAACATCACAACACACACAACACACACAACCTGAACAACGGAAACATAACAGGGAACACCACTCCTCCCCATAACCATGATTCACCAAACATTCAAACACCACTATCACAACGAAAAACAATCAACACATAATCAACCCAACACACTATATCCCACATTCACACACACACACACACAAACACACACAACCTGAACAACGGAAACATAGCAGGGAACACCACTCCTCCCCATAACCATCATTCACCAAAAATTCAAACACCACCATTACAACG]




>consensus_137#0
AAAAACAATCAACACATAATCAACCCAACACACAATATCCCACATTCACACACACACACA
CACACAAACACACTCCTTCATCAACATGTAGACAGAAAATGGAACACGACTACGCAAATC
AACATCGTCGTCCAACGAGAAATCTGTCCAACCATCAATGTCACTCTCATTACACCCACA
CATATGTTAACAAACAACAAGTGGACTGGTTGAGAGTACTTACATGCATTACACACACTA
GAACATCACAACACACACAACACACACAACCTGAACAACGGAAACATAACAGGGAACACC
ACTCCTCCCCATAACCATGATTCACCAAACATTCAAACACCACTATCACAACGAAAAACA
ATCAACACATAATCAACCCAACACACTATATCCCACATTCACACACACACACACACAAAC
ACACACAACCTGAACAACGGAAACATAGCAGGGAACACCACTCCTCCCCATAACCATCAT
TCACCAAAAATTCAAACACCACCATTACAACG

consensusID : consensus_137#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [CAANCAAAAGCTGTTGATGGCGGGTCGTCTACCACTACACCACAGATTATTGGCCCAATGCAAACCACACACGCAACCGCCGACGTGACAAAACCAAGCCATCAGCCGACCAGCCGAAGCTAGTAACAAACCGACCACACTCAGCAATGCCCGAAGGTCTAAGCACGCATGCGAAGCCGCCATCTCCGACACACCGCACAGATCCACTACAGCCAGTTAGTAACACTCACGGCCCATAAATGAGCCAAAGAGCCACCTACCGACCCAACCAAGACTGACAGAAATCA]

[+] EMBL BG930722             [CAANCAAAAGCTGTTGATGGCGGGTCGTCTACCACTACACCACAGATTATTGGCCCAATGCAAACCACACACGCAACCGCCGACGTGACAAAACCAAGCCATCAGCCGACCAGCCGAAGCTAGTAACAAACCGACCACACTCAGCAATGCCCGAAGGTCTAAGCACGCATGCGAAGCCGCCATCTCCGACACACCGCACAGATCCACTACAGCCAGTTAGTAACACTCACGGCCCATAAATGAGCCAAAGAGCCACCTACCGACCCAACCAAGACTGACAGAAATCA]




>consensus_137#1
CAANCAAAAGCTGTTGATGGCGGGTCGTCTACCACTACACCACAGATTATTGGCCCAATG
CAAACCACACACGCAACCGCCGACGTGACAAAACCAAGCCATCAGCCGACCAGCCGAAGC
TAGTAACAAACCGACCACACTCAGCAATGCCCGAAGGTCTAAGCACGCATGCGAAGCCGC
CATCTCCGACACACCGCACAGATCCACTACAGCCAGTTAGTAACACTCACGGCCCATAAA
TGAGCCAAAGAGCCACCTACCGACCCAACCAAGACTGACAGAAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_137#0      AAAAACAATCAACACATAATCAACCCAACACACAATATCCCACATTCACACACACACACA 60
consensus_137#1      ------------------------------------------------------------
                                                                                 

consensus_137#0      CACACAAACACACTCCTTCATCAACATGTAGACAGAAAATGGAACACGACTACGCAAATC 120
consensus_137#1      ------------------------------------------------------------
                                                                                 

consensus_137#0      AACATCGTCGTCCAACGAGAAATCTGTCCAACCATCAATGTCACTCTCATTACACCCACA 180
consensus_137#1      ------------------------------------------------------------
                                                                                 

consensus_137#0      CATATGTTAACAAACAACAAGTGGACTGGTTGAGAGT-ACTTACATGCATTACACACACT 239
consensus_137#1      ----------CAANCAAAAGCTG--TTGATGGCGGGTCGTCTACCACTACACCACAGATT 48
                               *** *** *  **   ** * * * **    ***    *   **** * *

consensus_137#0      AGAACATCACAACACACACAACACACACAACCTGAACAACGGAAACATAACAGGGAACAC 299
consensus_137#1      A--TTGGCCCAATGCAAACCACACACGCAACC--GCCGACGTGACAAAACCAAGC--CAT 102
                     *      * ***  ** ** ****** *****    * ***  *  * * ** *   ** 

consensus_137#0      CACTCCTCCCCATAACCATGATTCACCAAACATTCAAACACCACTATCACAACGAAAAAC 359
consensus_137#1      CAGCCGACC----AGCCGAAGCTAGT--AACAAACCGACCACACT-CAGCAATGCCCGAA 155
                     **  *  **    * **     *     ****  *  **  ****    *** *    * 

consensus_137#0      AATCAACACATAATCAACCCAACACACTATATCCCACATTCACACACACACACAC-ACAA 418
consensus_137#1      GGTCTAAGCACG--CATGCGAAGCCGCCATCTCCGACACAC-CGCACAGATCCACTACAG 212
                       ** *  **    **  * **  * * ** *** ***  * * **** *  *** *** 

consensus_137#0      ACACACA-CAACCTGAACAACGGAAACATAGCAGGGAACACCACTCCTCCCCATAACCAT 477
consensus_137#1      CCAGTTAGTAACACTCACGGCCCATAAATGAGCCAAAGAGCCACCTACCGACCCAACCAA 272
                      **   *  ***    **  *  * * **       *   ****    *  *  ***** 

consensus_137#0      CATTCACCAAAAATTCAAACACCACCATTACAACG 512
consensus_137#1      GACTGAC--AGAAATCA------------------ 287
                      * * **  * ** ***