cluster # 1443

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Schistosoma mansoni
cluster # 1443 cluster # 1443 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1443#0 length = 647 sequences # 1

consensus_1443#1 length = 369 sequences # 1

consensusID : consensus_1443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTACAAAGTTGTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTATTAACCGGGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGATGTTTTGGACTTTTTCGCCTTGAAATCTCGCCAACTAGCAACACGATTAACACGACTTTATTGATAATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTACGTCTCCTAAAATTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCTATAGCTAAATGCAGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGAGAGTCTTACCTTCGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGGTAAGGAAATTCTGTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGGGGTACGATCGCTGAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT]

[+] EMBL CD076928             [TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTACAAAGTTGTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTATTAACCGGGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGATGTTTTGGACTTTTTCGCCTTGAAATCTCGCCAACTAGCAACACGATTAACACGACTTTATTGATAATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTACGTCTCCTAAAATTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCTATAGCTAAATGCAGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGAGAGTCTTACCTTCGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGGTAAGGAAATTCTGTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGGGGTACGATCGCTGAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT]




>consensus_1443#0
TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGG
TACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTACAAAGTT
GTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTATTAACCG
GGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGATGTTTT
GGACTTTTTCGCCTTGAAATCTCGCCAACTAGCAACACGATTAACACGACTTTATTGATA
ATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTACGTCTCCTAAAA
TTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCTATAGCTAAATGC
AGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGAGAGTCTTACCTT
CGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGGTAAGGAAATTCT
GTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGGGGTACGATCGCT
GAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT

consensusID : consensus_1443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTACAAGTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTATAACCGGGTCTTTGTTCCAATTTAGTTTCGGTGGTTTAACCCGCAGATACACTTGATGTTTGGGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCAAGCCAAGGGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCAAGCATTTTTGTCCACTTTAGT]

[+] EMBL SMAA69896            [AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTACAAGTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTATAACCGGGTCTTTGTTCCAATTTAGTTTCGGTGGTTTAACCCGCAGATACACTTGATGTTTGGGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCAAGCCAAGGGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCAAGCATTTTTGTCCACTTTAGT]




>consensus_1443#1
AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAA
TGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTAC
AAGTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTATA
ACCGGGTCTTTGTTCCAATTTAGTTTCGGTGGTTTAACCCGCAGATACACTTGATGTTTG
GGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCAAGCCAAG
GGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCAAGCATTTTTGTC
CACTTTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1443#0      ------TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAA 54
consensus_1443#1      AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAA 60
                            ******************************************************

consensus_1443#0      TGATGGTACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTAC 114
consensus_1443#1      TGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTAC 120
                      ************************************  ***************** ****

consensus_1443#0      AAAGTTGTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTAT 174
consensus_1443#1      AA-GTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTAT 179
                      ** ************ ********************* *********** **********

consensus_1443#0      TAACCGGGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGA 234
consensus_1443#1      -AACCGGGTCTTTGTTCCAATTTAGTTT-CGGTGGTT-TAACCCGCAGATA--CACTTGA 234
                       ******* *** *** ** *** **** *******  **  **** ****  *  ****

consensus_1443#0      TGTTTTGGACTTTTTCGCC-TTGAAATCTC-GCCAACT----AGCAACACGATTAACACG 288
consensus_1443#1      TGTTT-GGGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCA 293
                      ***** ** * ******** ******  ** *******    **   **  **  *  * 

consensus_1443#0      ACTTTATTGATAATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTA 348
consensus_1443#1      AGCCAAGGGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCA-AGCA 352
                      *    *  *        *  *          **   * *** * ***      *  *  *

consensus_1443#0      CGTCTCCTAAAATTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCT 408
consensus_1443#1      TTTTTGTCCACTTTAGT------------------------------------------- 369
                        * *    *  ****                                            

consensus_1443#0      ATAGCTAAATGCAGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGA 468
consensus_1443#1      ------------------------------------------------------------
                                                                                  

consensus_1443#0      GAGTCTTACCTTCGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGG 528
consensus_1443#1      ------------------------------------------------------------
                                                                                  

consensus_1443#0      TAAGGAAATTCTGTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGG 588
consensus_1443#1      ------------------------------------------------------------
                                                                                  

consensus_1443#0      GGTACGATCGCTGAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT 647
consensus_1443#1      -----------------------------------------------------------