These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAGAGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGATTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTTGGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTGCGAATAACGTTGACAAATTTCACAAAACCTGAAACATTTCTCAATTGATTTAGGTGGATGGACCAAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTATTTGAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCACAATCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTNTCATTTAAACTCTCGC] [+] EMBL CD076989 [AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAGAGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGATTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTTGGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTGCGAATAACGTTGACAAATTTCACAAAACCTGAAACATTTCTCAATTGATTTAGGTGGATGGACCAAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTATTTGAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCACAATCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTNTCATTTAAACTCTCGC] consensusID : consensus_1458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTTGATTACTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTTTCATTTAAACTCTCGCAATTACTCTTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGCTTAAAAATCTGATCTGGTTCACAATTAGCGATAATGGTGCAGAAAATGGAGGATCACAAAATATGGAGCATTTATCACTAGGTTTTATATTATCCTTCATGAAATGACGAAAATTTTCTTCTTCCATTTGACTGAAGAAAAACCCATTTACCATATTATACCGTGAGAAACG] [+] EMBL CD187494 [TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTTGATTACTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTTTCATTTAAACTCTCGCAATTACTCTTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGCTTAAAAATCTGATCTGGTTCACAATTAGCGATAATGGTGCAGAAAATGGAGGATCACAAAATATGGAGCATTTATCACTAGGTTTTATATTATCCTTCATGAAATGACGAAAATTTTCTTCTTCCATTTGACTGAAGAAAAACCCATTTACCATATTATACCGTGAGAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1458#0 AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAG 60 consensus_1458#1 ------------------------------------------------------------ consensus_1458#0 AGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGA 120 consensus_1458#1 ------------------------------------------------------------ consensus_1458#0 TTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTT 180 consensus_1458#1 -TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTT 59 * **** * ** ** * **** * ** * * ** ** consensus_1458#0 GGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTG-CGA 239 consensus_1458#1 GATTACTTTATAATCCAGCAA-GTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGA 118 * * *** ** * **** * *** * * * ** * * * * * * *** consensus_1458#0 ATAACGTTGACAAATTTCACAAAACCTGAAACAT--TTCTCAATTGATTTAGGTGGATGG 297 consensus_1458#1 AGAAAAATGGGAGAACTAGCAGG-TATGGAATATCGTTTTCATTTAAACTCTCGCAATTA 177 * ** ** * * * ** ** ** ** ** *** ** * * ** consensus_1458#0 ACCAAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTA 357 consensus_1458#1 CTCTTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGC-------------- 223 * * * * ******* ** * * ** ** * ** consensus_1458#0 TTTGAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCA 417 consensus_1458#1 TTAAAAATCTGATCTGGTTCACAATTAGCGATAAT--GGTGCAGAAAATGGAGGA--TCA 279 ** ** * * * * ** * *** * ** *** ** ** ** *** consensus_1458#0 CAATCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGG 477 consensus_1458#1 CAA---AATATGGAGCATTTATCACTAGGTTTTATATTATCCTTCATG-----AAATGAC 331 *** *** * *** ** ** ** ** *** **** ** * ***** consensus_1458#0 GCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCG 537 consensus_1458#1 GAAAATTTT-----CTTCTTCCATTTGACTGAAGAAAAACCCATTTACCATATTATACCG 386 * ** ** *** *** ** * * * * * * ** *** ** consensus_1458#0 TTNTCATTTAAACTCTCGC 556 consensus_1458#1 TGAGAAACG---------- 395 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||