cluster # 1459

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Schistosoma mansoni
cluster # 1459 cluster # 1459 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1459#0 length = 543 sequences # 1

consensus_1459#1 length = 482 sequences # 1

consensusID : consensus_1459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [ATGTAGGCCGTCATAATTTGATTAGAACGGCTTTACACTAGCATATTGTGCAAGTACTTTGTGACATTCTGTCCATTTACCAGGTATATCCGTCTTGGGTTTTCGTTACTATAGATCAGTTCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAGTAGGGAGGGTAATTATGTTAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTAAAAAATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAAAACCCAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATGTTGCAATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAAAGTTATTTGTATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAATTACATTTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATNTG]

[+] EMBL CD131358             [ATGTAGGCCGTCATAATTTGATTAGAACGGCTTTACACTAGCATATTGTGCAAGTACTTTGTGACATTCTGTCCATTTACCAGGTATATCCGTCTTGGGTTTTCGTTACTATAGATCAGTTCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAGTAGGGAGGGTAATTATGTTAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTAAAAAATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAAAACCCAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATGTTGCAATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAAAGTTATTTGTATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAATTACATTTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATNTG]




>consensus_1459#0
ATGTAGGCCGTCATAATTTGATTAGAACGGCTTTACACTAGCATATTGTGCAAGTACTTT
GTGACATTCTGTCCATTTACCAGGTATATCCGTCTTGGGTTTTCGTTACTATAGATCAGT
TCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAGTAGGGAGGGTAATTATGT
TAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTAAAA
AATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAAAACC
CAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATGTTGC
AATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAAAGTT
ATTTGTATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAATTACAT
TTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATAT
NTG

consensusID : consensus_1459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACAGTCGAATTACATTTGACTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATTTGTTTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCTCAGTAGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCAGTGTGGTTTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATTGATGCACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGACCAACAAAAGAGAATATTAATTTTTTATCTAAAGAATTAAGGAAACCAAATTATTTTTCCTACCACTTATTTTTCAGTCATTCCATAACTAAGCAGTTACTGAAACAATTAGCAGAAGCTGATGAAAATGAATTAG]

[+] EMBL CD183286             [ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACAGTCGAATTACATTTGACTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATTTGTTTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCTCAGTAGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCAGTGTGGTTTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATTGATGCACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGACCAACAAAAGAGAATATTAATTTTTTATCTAAAGAATTAAGGAAACCAAATTATTTTTCCTACCACTTATTTTTCAGTCATTCCATAACTAAGCAGTTACTGAAACAATTAGCAGAAGCTGATGAAAATGAATTAG]




>consensus_1459#1
ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACAGTCGAATTACATTTGA
CTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATTTGT
TTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCTCAGT
AGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCAGTGT
GGTTTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATTGATGC
ACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGACCAACAAAAGAGAA
TATTAATTTTTTATCTAAAGAATTAAGGAAACCAAATTATTTTTCCTACCACTTATTTTT
CAGTCATTCCATAACTAAGCAGTTACTGAAACAATTAGCAGAAGCTGATGAAAATGAATT
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1459#0      ATGTAGGCCGTCATAATTTGAT-TAGAACGGCTTTACACTAGCATATTGTGCAAGTACTT 59
consensus_1459#1      --ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACA--GTCGAATTACAT 56
                          ** ***   *  **  *  * *  * * *** * ***  * *  **  ** *** *

consensus_1459#0      TGTGACATTCTGTCCATTTACCAGGTATATCCGTC-TTGGGTTTTCGTTACTATAGATCA 118
consensus_1459#1      TTGACTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATAT 116
                      *      * **  *  ***  *** * ***   ** * *   **     * * * ***  

consensus_1459#0      GTTCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAG-TAGGGAGGGTAATTA 177
consensus_1459#1      TTGTTTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCT 176
                       *   **   *      *** **  *     **     *  **  *    **  * **  

consensus_1459#0      TGTTAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTA 237
consensus_1459#1      CAGTAGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCA 236
                         **  * **       ****    ****** *** *  *    * **       ** *

consensus_1459#0      AAAAATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAA- 296
consensus_1459#1      GTGTGGT-TTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATT 295
                            *   **   **   **  ** *  **** ***  *   * *** *** ** *  

consensus_1459#0      AACCCAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATG 356
consensus_1459#1      GATGCACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGAC-CAACAAA 354
                       *  **  *  ** *  *     ****   *  **    *      *   **  *  *  

consensus_1459#0      TTGCAATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAA 416
consensus_1459#1      AGAGAATATTA-ATTTTTTATCTAAAGAATTAA--GGAAACCAAATTATTTTTCC-TACC 410
                          ******  **  * * * * *  ***  *   ** *  ** * * *  **   *  

consensus_1459#0      AGTTATTTGT--ATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAA 474
consensus_1459#1      ACTTATTTTTCAGTCATTCCATAACT-AAGCAGTTACTGAAACAATTAGCAGAAGCTGA- 468
                      * ****** *   *** * ***** * *     ** **   *   *       **  ** 

consensus_1459#0      TTACATTTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTT 534
consensus_1459#1      TGAAAATGAATTAG---------------------------------------------- 482
                      * * * *  * *                                                

consensus_1459#0      GGATATNTG 543
consensus_1459#1      ---------