These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [TGATGATAATTGAGAACAAGGTAATAAATTAAATAAGGCACCAGTTGAACCAGTACCAAGTGGATTAGGATTTGAAAGAATTGGTAAAGATTTTGTACAATTAATTGTTACATTTGTTGTAATTGTATTTGTTACAGTTGGTACACCTGATACTGTAATCGCACCGGAAAGAGCAGCTAATGTAGCGATATTAGCAGTTAATCCAGTTGGTGATGTAAATAATGATGGTAAATTTGATGAATTACTGCAAATTGATGATGAACTAGTTTCAGCTAAAGGTATTGGTTGTATACCTCGAGTTGATGTTAAATGACTATGTTGTACAGTTGGAGGATTTCCATAACCAATTGTTGGATAACCGAATAAAGCTGTAGGAGACATTCGAAGTGGTGCTGGAATAAGTGAAGACGAAGGAAAGTATACTGGAGGTGATAATGCAGAACGACTTGACTGAGAATCTTGTGGTTTAGGTGATATAAAAGATCCAGTTAAAGATTGTTGTGCAACTGATACTGTTGTTAATGCTGAAGCAGCATTAAGATCAGGCACTATTACATCGAAT] [+] EMBL CD096669 [TGATGATAATTGAGAACAAGGTAATAAATTAAATAAGGCACCAGTTGAACCAGTACCAAGTGGATTAGGATTTGAAAGAATTGGTAAAGATTTTGTACAATTAATTGTTACATTTGTTGTAATTGTATTTGTTACAGTTGGTACACCTGATACTGTAATCGCACCGGAAAGAGCAGCTAATGTAGCGATATTAGCAGTTAATCCAGTTGGTGATGTAAATAATGATGGTAAATTTGATGAATTACTGCAAATTGATGATGAACTAGTTTCAGCTAAAGGTATTGGTTGTATACCTCGAGTTGATGTTAAATGACTATGTTGTACAGTTGGAGGATTTCCATAACCAATTGTTGGATAACCGAATAAAGCTGTAGGAGACATTCGAAGTGGTGCTGGAATAAGTGAAGACGAAGGAAAGTATACTGGAGGTGATAATGCAGAACGACTTGACTGAGAATCTTGTGGTTTAGGTGATATAAAAGATCCAGTTAAAGATTGTTGTGCAACTGATACTGTTGTTAATGCTGAAGCAGCATTAAGATCAGGCACTATTACATCGAAT] consensusID : consensus_1523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [CTTCAGTAGCCTCTGCATCTCCACTACCTAAACTGTTACGTTGATTTAAATTATCTTGTTGATGATTTTCAATACGACCACCTGTGGCTGCCAATTTATTTTTATCTGGTCCCACGACATCAGATGTACCACTGAAAGCAACATGGCCACCTCCTTTAGTTGAATGTTTATTACCATTAGTTTGATCATTGGGGTTTTTATTTATTTCATGTTGTTGTTTACCATCTGTATCATAAATTTGTTGTAATTGTATTTGTTACAGTTGGTACACCTGATACTGTAATCGCAGCGGAAAGAGCAGCTAATGTAGCGATATTAGCAGTTAATCCAGTTGGTGATGTAAATAATGATGGTAAATTTGATGAATTACTGCGAAGTTGATGATGAACTAGTTTCAGTA] [-] EMBL CD061192 [CTTCAGTAGCCTCTGCATCTCCACTACCTAAACTGTTACGTTGATTTAAATTATCTTGTTGATGATTTTCAATACGACCACCTGTGGCTGCCAATTTATTTTTATCTGGTCCCACGACATCAGATGTACCACTGAAAGCAACATGGCCACCTCCTTTAGTTGAATGTTTATTACCATTAGTTTGATCATTGGGGTTTTTATTTATTTCATGTTGTTGTTTACCATCTGTATCATAAATTTGTTGTAATTGTATTTGTTACAGTTGGTACACCTGATACTGTAATCGCAGCGGAAAGAGCAGCTAATGTAGCGATATTAGCAGTTAATCCAGTTGGTGATGTAAATAATGATGGTAAATTTGATGAATTACTGCGAAGTTGATGATGAACTAGTTTCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1523#0 ------------------------------------------------------------ consensus_1523#1 CTTCAGTAGCCTCTGCATCTCCACTACCTAAACTGTTACGTTGATTTAAATTATCTTGTT 60 consensus_1523#0 ------------------------------------------------------------ consensus_1523#1 GATGATTTTCAATACGACCACCTGTGGCTGCCAATTTATTTTTATCTGGTCCCACGACAT 120 consensus_1523#0 -TGATG-ATAATTGAGAACAAGGTAATAAATTAAATAAGGCACCAGTTGA--ACCAGTAC 56 consensus_1523#1 CAGATGTACCACTGAAAGCAACATGGCCACCTCCTTTAGTTGAATGTTTATTACCATTAG 180 **** * * *** * *** * * * * ** *** * **** ** consensus_1523#0 CAAGTGGATTAGGATTTGAAAGAATTGGTAAAGATTTTGTACAATTAAT-TGTTACATTT 115 consensus_1523#1 TTTGATCATTGGGGTTTTTATTTATTTCATGTTGTTGTTTACCATCTGTATCATAAATTT 240 * *** ** *** * *** ** * *** ** * * ** **** consensus_1523#0 GTTGTAATTGTATTTGTTACAGTTGGTACACCTGATACTGTAATCGCACCGGAAAGAGCA 175 consensus_1523#1 GTTGTAATTGTATTTGTTACAGTTGGTACACCTGATACTGTAATCGCAGCGGAAAGAGCA 300 ************************************************ *********** consensus_1523#0 GCTAATGTAGCGATATTAGCAGTTAATCCAGTTGGTGATGTAAATAATGATGGTAAATTT 235 consensus_1523#1 GCTAATGTAGCGATATTAGCAGTTAATCCAGTTGGTGATGTAAATAATGATGGTAAATTT 360 ************************************************************ consensus_1523#0 GATGAATTACTGCAAA-TTGATGATGAACTAGTTTCAGCTAAAGGTATTGGTTGTATACC 294 consensus_1523#1 GATGAATTACTGCGAAGTTGATGATGAACTAGTTTCAGTA-------------------- 400 ************* ** ********************* consensus_1523#0 TCGAGTTGATGTTAAATGACTATGTTGTACAGTTGGAGGATTTCCATAACCAATTGTTGG 354 consensus_1523#1 ------------------------------------------------------------ consensus_1523#0 ATAACCGAATAAAGCTGTAGGAGACATTCGAAGTGGTGCTGGAATAAGTGAAGACGAAGG 414 consensus_1523#1 ------------------------------------------------------------ consensus_1523#0 AAAGTATACTGGAGGTGATAATGCAGAACGACTTGACTGAGAATCTTGTGGTTTAGGTGA 474 consensus_1523#1 ------------------------------------------------------------ consensus_1523#0 TATAAAAGATCCAGTTAAAGATTGTTGTGCAACTGATACTGTTGTTAATGCTGAAGCAGC 534 consensus_1523#1 ------------------------------------------------------------ consensus_1523#0 ATTAAGATCAGGCACTATTACATCGAAT 562 consensus_1523#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||