cluster # 1562

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Schistosoma mansoni
cluster # 1562 cluster # 1562 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1562#0 length = 614 sequences # 1

consensus_1562#1 length = 314 sequences # 1

consensusID : consensus_1562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT]

[+] EMBL CD078594             [AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT]




>consensus_1562#0
AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAG
TATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTC
GGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTC
TCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATT
CTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTT
TTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATG
CTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTA
GAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACT
TATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCA
CTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGG
GATTTCGGTCAACT

consensusID : consensus_1562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGAAGGAGTAATTGTCC]

[+] EMBL CD077480             [GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGAAGGAGTAATTGTCC]




>consensus_1562#1
GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG
AATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTA
ACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGC
TGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTC
TCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGA
AGGAGTAATTGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1562#0      ----------------------AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG 38
consensus_1562#1      GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG 60
                                            **************************************

consensus_1562#0      AATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTT 98
consensus_1562#1      AATATTGGATACGTATGGACAGTATATGGGGG------GACACTTTATCCTCGGATAGAT 114
                      *****************************             * * **  **   *   *

consensus_1562#0      ATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGAT-ACGCTTAAC 157
consensus_1562#1      TCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAAT 174
                          *   *  *  * **  ******** *    ** ** * *   * ** *   **** 

consensus_1562#0      ACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGT 217
consensus_1562#1      AATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTC 234
                      * *     *    * *   *       ***** * *     ****      * *  *   

consensus_1562#0      GAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTC-CGAG 276
consensus_1562#1      AACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAAC 294
                       *   *** * ***      *        *        *   *     * ** ** * * 

consensus_1562#0      TGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCA 336
consensus_1562#1      GGTTGAAGGAGTAATTGTCC---------------------------------------- 314
                       * ****  * *   *  *                                         

consensus_1562#0      TCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCT 396
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      ATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCA 456
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      TGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGA 516
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      AATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTC 576
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      GGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT 614
consensus_1562#1      --------------------------------------