These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTCAAGTTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAATVTGAAGCAGTCTTTCTGAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCTTAGGAAAGCCNAAGG] [+] EMBL SM1247331 [GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTCAAGTTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAATVTGAAGCAGTCTTTCTGAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCTTAGGAAAGCCNAAGG] consensusID : consensus_1631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTYYMAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTACAGTGAGTACGAATCTGAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA] [+] EMBL SM1247329 [GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACATTGGCAATGACTGTACTGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGGTCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGACTTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTYYMAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTACAGTGAGTACGAATCTGAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1631#0 GTAATTTGATCAGGCTGGGACCTGACATSAGATGTAGAAGGAGGACGCCAGTTAGCACAT 60 consensus_1631#1 GTAATTTGATCAGGCTGGGACCTGACATGAGATGTAGAAGGAGGACGCCAGTTAGCACAT 60 **************************** ******************************* consensus_1631#0 TGGCAATGACTGTACTGGGCCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGG 120 consensus_1631#1 TGGCAATGACTGTACTGG-CCAGAAACACGTTGTAGTCTGTGCAAAGTTGTAGTAGACGG 119 ****************** ***************************************** consensus_1631#0 TCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGAC 180 consensus_1631#1 TCACCGTTATCGGGCACAGTGATGATAAATGAATTAGTGTCACTATCTCGAAACATCGAC 179 ************************************************************ consensus_1631#0 TTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTC 240 consensus_1631#1 TTCGGTGACCTAGAAATCAGCTCGCCTATGGTGATAATGCTGTCCTATCTAAACGATCTY 239 *********************************************************** consensus_1631#0 AAG----------------TTACTGACTGGTATAAACTAATGCTACCAGTGAGTACGAAT 284 consensus_1631#1 YMAAAAGGTTTTAAACCTTTKGGHMNCTGGTATAAACTAATGCTAC-AGTGAGTACGAAT 298 * ******************** ************* consensus_1631#0 VTGAAGCAGTCTTTCTGAAATCGSGTATGTCATTCAAGCTAGCCTTCATCGGTCGGTTCT 344 consensus_1631#1 CTGAAGCAGTCTTTCTGAAATCGCGTATGTCATTCAAGCTA------------------- 339 ********************** ***************** consensus_1631#0 TAGGAAAGCCNAAGG 359 consensus_1631#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||