cluster # 1636

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Schistosoma mansoni
cluster # 1636 cluster # 1636 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1636#0 length = 504 sequences # 1

consensus_1636#1 length = 389 sequences # 1

consensusID : consensus_1636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACTAGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCATCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCTTTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGATAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCTGCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAATGAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATTGTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGTTCAAATAACACTGGATTTACAATT]

[+] EMBL CD061720             [AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACTAGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCATCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCTTTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGATAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCTGCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAATGAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATTGTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGTTCAAATAACACTGGATTTACAATT]




>consensus_1636#0
AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACT
AGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCA
TCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCT
TTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGA
TAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCT
GCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAAT
GAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATT
GTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGT
TCAAATAACACTGGATTTACAATT

consensusID : consensus_1636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [ACGTCCAAGAGATATAAATAATTCAAACATTGCCACTCTACCACAAGAGACGTTAGACAATAAGCGAGTCACTTCTGTTTCGCAGTCCATTCTTCCAGAAGCCAGTTCACCTCGGACAAGATTTGAAATTTATAAAGATGACTCTGATGATCTAGTTAATACAAAACCTGCTGAAAATGTATCATTATCTTCGGATTTATCAACCAAAGCTGATTCTGTAACTTTTCAGCAACCAGAGGTGACCTGTATTGATAATACCGAACGTTTGTATGTTAACATGCGTGAGGCACGAATACAAATAGAAGAACAACGGAATCGATATGATCGGATCACTTCAACTGGAATCAATAATACCAATTCTAGCGCTCAAAAACCATTGCAGCATGTCA]

[+] EMBL BG932325             [ACGTCCAAGAGATATAAATAATTCAAACATTGCCACTCTACCACAAGAGACGTTAGACAATAAGCGAGTCACTTCTGTTTCGCAGTCCATTCTTCCAGAAGCCAGTTCACCTCGGACAAGATTTGAAATTTATAAAGATGACTCTGATGATCTAGTTAATACAAAACCTGCTGAAAATGTATCATTATCTTCGGATTTATCAACCAAAGCTGATTCTGTAACTTTTCAGCAACCAGAGGTGACCTGTATTGATAATACCGAACGTTTGTATGTTAACATGCGTGAGGCACGAATACAAATAGAAGAACAACGGAATCGATATGATCGGATCACTTCAACTGGAATCAATAATACCAATTCTAGCGCTCAAAAACCATTGCAGCATGTCA]




>consensus_1636#1
ACGTCCAAGAGATATAAATAATTCAAACATTGCCACTCTACCACAAGAGACGTTAGACAA
TAAGCGAGTCACTTCTGTTTCGCAGTCCATTCTTCCAGAAGCCAGTTCACCTCGGACAAG
ATTTGAAATTTATAAAGATGACTCTGATGATCTAGTTAATACAAAACCTGCTGAAAATGT
ATCATTATCTTCGGATTTATCAACCAAAGCTGATTCTGTAACTTTTCAGCAACCAGAGGT
GACCTGTATTGATAATACCGAACGTTTGTATGTTAACATGCGTGAGGCACGAATACAAAT
AGAAGAACAACGGAATCGATATGATCGGATCACTTCAACTGGAATCAATAATACCAATTC
TAGCGCTCAAAAACCATTGCAGCATGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1636#0      AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACT 60
consensus_1636#1      -------ACGTCCAAGAGATATA--AATAATTCAAACATTGCCA---CTCTACCACAAG- 47
                              **  *** *   **   *  *  ***    * **      ***  * ***  

consensus_1636#0      AGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCA 120
consensus_1636#1      AGACGTTAGACAATAAG-CGAGTCACTTC---TGTTTCGCAGTCCATTCTTCCAGA---A 100
                      ** *   * * ** **  * **  ** *    **  **     *  * * * *      *

consensus_1636#0      TCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCT 180
consensus_1636#1      GCCAGTTCACCTCGGACAAGATTTGAAATTTATAAAG---ATGACTCTGATGATCTAGTT 157
                       *     *  **    ****    ***    **  **    **  *****     **  *

consensus_1636#0      TTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGA 240
consensus_1636#1      AATACAAAACCTGCTGAAAATGTATCATTATCTTCGGATTTATCA-ACCAAAGC---TGA 213
                         *  **   *        *   ****  *  *  * * ** ** *** * **   ***

consensus_1636#0      TAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCT 300
consensus_1636#1      TTCTGTAAC---TTTTCAGCAACCAGAGGTGA---------CCTGTATTGATAATACCGA 261
                      *   ***     ****  *     * ** **          ** ** ** *** **    

consensus_1636#0      GCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAAT 360
consensus_1636#1      ACGTTTGTATGTTAACATGCGTGAG---GCACGAATACAAATAGAAGA-------ACAAC 311
                       ****  **    *    * ** **    *****  *    *   **        **** 

consensus_1636#0      GAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATT 420
consensus_1636#1      GG--AATCGATATGATCGGATCACTTCAACTGGAATCAATA----ATACCAATTCTAGC- 364
                      *   *  *   ** **    ***  * *   **   *   *     * *  **   *   

consensus_1636#0      GTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGT 480
consensus_1636#1      GCTCAAAAACCATTGCAGCATGTCA----------------------------------- 389
                      * * **** ** *   *  * ** *                                   

consensus_1636#0      TCAAATAACACTGGATTTACAATT 504
consensus_1636#1      ------------------------