cluster # 166

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Schistosoma mansoni
cluster # 166 cluster # 166 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_166#0 length = 640 sequences # 1

consensus_166#1 length = 171 sequences # 1

consensusID : consensus_166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CGAGGCCTGNAATTCGGCACCAGGCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCAACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGTTGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATTGGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGTAATTTTTCCTAATAAATAT]

[+] EMBL CD081530             [CGAGGCCTGNAATTCGGCACCAGGCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCAACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGTTGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATTGGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGTAATTTTTCCTAATAAATAT]




>consensus_166#0
CGAGGCCTGNAATTCGGCACCAGGCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTAT
GGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGG
TGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGA
GTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATC
ACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCAGGTGG
GAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGT
GAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCA
ACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGT
TGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATT
GGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGC
TTAATGTTACAATATTTATGTAATTTTTCCTAATAAATAT

consensusID : consensus_166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence

                              [AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCGTTTCGCCCAATGGTCCGACTGTGGTTTGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACCTGTCAGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCG]

[+] EMBL CD141095             [AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCGTTTCGCCCAATGGTCCGACTGTGGTTTGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACCTGTCAGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCG]




>consensus_166#1
AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCGTTTCGCCCAATGGTCCGACTGT
GGTTTGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACC
TGTCAGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_166#0      CGAGGCCTGNAATTCGGCACCAGGCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTAT 60
consensus_166#1      ----------AGTGTAGTAGGAGGTGGTG-TCGGTCTCCTCGGTTGTCGTTTCGCCCAAT 49
                               * *   * *  *** * ** * **     * *   *  ***  * *  **

consensus_166#0      GGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGG 120
consensus_166#1      GGTCCGACTGTGGTTTGTCGGTGTGGTTCGCCTCCTCGG-TCTTCCACTTCGTCTGTGTC 108
                     *** *  ***  *        **  * * * *  **    * *  **   *   **    

consensus_166#0      TGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGA 180
consensus_166#1      TCTTTCCATACCTGTCAGTGTAGTAGGAGGTGGT----GTCGGTCTCCTCGGTTG--TCA 162
                     * ***  **    *    *  ***    * ** *      * ***      * **    *

consensus_166#0      GTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATC 240
consensus_166#1      TGCTGGTCG--------------------------------------------------- 171
                       ******                                                    

consensus_166#0      ACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCAGGTGG 300
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGT 360
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCA 420
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      ACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGT 480
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      TGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATT 540
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGC 600
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      TTAATGTTACAATATTTATGTAATTTTTCCTAATAAATAT 640
consensus_166#1      ----------------------------------------