cluster # 1667

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Schistosoma mansoni
cluster # 1667 cluster # 1667 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1667#0 length = 306 sequences # 1

consensus_1667#1 length = 281 sequences # 1

consensusID : consensus_1667#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [TTTGATAGAAAATATAAAACTACTTGGCAATGTGTAGTTGGCAAGAATTTTTGTGGGTCCTTCACTCATGAAACAGGTGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTTTTTCGATCAATTAAACCAAAAACACAAGTACTTCATACTGATTCGAGTTCGACTCAATGAACCCTTTCAAATCTTGATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATTGGAAAAAAATTATAACTACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTAATTGAT]

[+] EMBL SMAA43873            [TTTGATAGAAAATATAAAACTACTTGGCAATGTGTAGTTGGCAAGAATTTTTGTGGGTCCTTCACTCATGAAACAGGTGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTTTTTCGATCAATTAAACCAAAAACACAAGTACTTCATACTGATTCGAGTTCGACTCAATGAACCCTTTCAAATCTTGATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATTGGAAAAAAATTATAACTACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTAATTGAT]




>consensus_1667#0
TTTGATAGAAAATATAAAACTACTTGGCAATGTGTAGTTGGCAAGAATTTTTGTGGGTCC
TTCACTCATGAAACAGGTGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTT
TTTCGATCAATTAAACCAAAAACACAAGTACTTCATACTGATTCGAGTTCGACTCAATGA
ACCCTTTCAAATCTTGATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATT
GGAAAAAAATTATAACTACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTA
ATTGAT

consensusID : consensus_1667#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTTGGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAAACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNGATGCTNCTTTCAGAAAATNTCCTCAATNTCCTNCAACNTTT]

[+] EMBL SM363                [ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTTGGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTTCATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAAACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNGATGCTNCTTTCAGAAAATNTCCTCAATNTCCTNCAACNTTT]




>consensus_1667#1
ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTT
GGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTT
CATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAA
ACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNG
ATGCTNCTTTCAGAAAATNTCCTCAATNTCCTNCAACNTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1667#0      -----------------------------------TTTGATAGAAAATATAAAACTACTT 25
consensus_1667#1      ATTGGAGTAGTNTNGTTCATTTNATCAAGAGAAATTTGGNTAGNTTTTTTNAAACTACTT 60
                                                         ** * ***    * * *********

consensus_1667#0      GGCAATGTGTAGTTGG-CAAGAATTTTTGTGGGTCCTTCACTCATGAAACAGGTG-ATTT 83
consensus_1667#1      GGCAATGTGTNGTCGGGCAAGAATTTTGGTGGGNCCTCCACTCATGAAACAGGTGGATTT 120
                      ********** ** ** ********** ***** *** ***************** ****

consensus_1667#0      CATTCACTTTAAGCTAGAAAATTTGACGTTTTTGCTTTTT-CGATCAA-TTAAACCAAAA 141
consensus_1667#1      CATTCACTTTAAGCTAGAAAATTTGACGTTTTGGNTTTTTTCGATCAAATTAACNCANAA 180
                      ******************************** * ***** ******* ****  ** **

consensus_1667#0      ACACAAGTACTTCATACTGATTCGAGTTCGA--CTCAATGAA--CCCTTTCAAAT-CTTG 196
consensus_1667#1      ACACAAGTTCTNCATNCTGATTCGGGTTNCGACCTCANTGAAACCCCTTCCAAANTCTNG 240
                      ******** ** *** ******** ***     **** ****  ***** ****  ** *

consensus_1667#0      ATGCTGCTTTTAGAAATTACTCATTTCTGAAATGTTACTAAATTGGAAAAAAATTATAAC 256
consensus_1667#1      ATGCTNCTTTCAGAAAATN----TCCTCAATNTCCTNCAACNTTT--------------- 281
                      ***** **** ***** *     *     *  *  * * *  **                

consensus_1667#0      TACTGTGCAAATTAGTTTTTGTCGGTTTTTTTTAATAAAAATTAATTGAT 306
consensus_1667#1      --------------------------------------------------