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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1670 cluster # 1670       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1670#0 length = 479 sequences # 1  
consensus_1670#1 length = 227 sequences # 1  

consensusID : consensus_1670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence
                              [AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAACCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATACATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGCTCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTAAACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATATATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG]

[+] EMBL CD182100             [AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAACCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATACATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGCTCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTAAACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATATATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG]


>consensus_1670#0 AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAA CCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATA CATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGC TCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGA CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC CGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTA AACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATAT ATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG



consensusID : consensus_1670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence
                              [ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGAAGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC]

[-] EMBL CD119194             [ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGAAGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC]


>consensus_1670#1 ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCG AAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACAT CGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGA AGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1670#0      AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAA 60
consensus_1670#1      ------------------------------------------------------------
                                                                                  

consensus_1670#0      CCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATA 120
consensus_1670#1      ------------------------------------------------------------
                                                                                  

consensus_1670#0      CATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGC 180
consensus_1670#1      ------------------------------------------------------------
                                                                                  

consensus_1670#0      TCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGA 240
consensus_1670#1      --------------ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGA 46
                                    **************************** *****************

consensus_1670#0      CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC 300
consensus_1670#1      CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC 106
                      ************************************************************

consensus_1670#0      CGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTA 360
consensus_1670#1      CGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTT 166
                      ******************************* ************************ ** 

consensus_1670#0      AACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATAT 420
consensus_1670#1      GACATCTGAGGGGA-AGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGA 225
                       **  **   *  * * ***     * *  **    * ***      * *    *  *  

consensus_1670#0      ATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG 479
consensus_1670#1      AC--------------------------------------------------------- 227
                      *                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)