These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAACCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATACATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGCTCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTAAACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATATATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG] [+] EMBL CD182100 [AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAACCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATACATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGCTCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTAAACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATATATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG] consensusID : consensus_1670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGAAGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC] [-] EMBL CD119194 [ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGAAGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1670#0 AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAA 60 consensus_1670#1 ------------------------------------------------------------ consensus_1670#0 CCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATA 120 consensus_1670#1 ------------------------------------------------------------ consensus_1670#0 CATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGC 180 consensus_1670#1 ------------------------------------------------------------ consensus_1670#0 TCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGA 240 consensus_1670#1 --------------ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGA 46 **************************** ***************** consensus_1670#0 CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC 300 consensus_1670#1 CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC 106 ************************************************************ consensus_1670#0 CGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTA 360 consensus_1670#1 CGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTT 166 ******************************* ************************ ** consensus_1670#0 AACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATAT 420 consensus_1670#1 GACATCTGAGGGGA-AGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGA 225 ** ** * * * *** * * ** * *** * * * * consensus_1670#0 ATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG 479 consensus_1670#1 AC--------------------------------------------------------- 227 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||