These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATTGTGGTNCATNGGGNGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCANGTTCATGANGCCATGAAANCCANCTTGGTGGAGATAATGTAAGTTCATGAAATCCATCTNGAAAACGACGAATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCCTCGAAGGTGGTATNTGTTTTCCATTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCCAANCAGGCCCTAAGGAANNATTTTTTTTCAANTNN] [+] EMBL SM374 [GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATTGTGGTNCATNGGGNGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCANGTTCATGANGCCATGAAANCCANCTTGGTGGAGATAATGTAAGTTCATGAAATCCATCTNGAAAACGACGAATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCCTCGAAGGTGGTATNTGTTTTCCATTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCCAANCAGGCCCTAAGGAANNATTTTTTTTCAANTNN] consensusID : consensus_1673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATTGNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCATGAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTCTCGAAGTTGGTATNTGTNTCCATTGNTAAATTGGGTA] [+] EMBL SM6501 [TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATTGNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCATGAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTCTCGAAGTTGGTATNTGTNTCCATTGNTAAATTGGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1673#0 ------------------GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATT 42 consensus_1673#1 TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATT 60 ***** ****** ***** *********************** consensus_1673#0 GTGGTNCATNGGGNGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATG 102 consensus_1673#1 GNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATG 120 * ** *** * ********************************************** consensus_1673#0 TAACACCANGTTCATG-ANGCCATG--AAANCCANCTTGGTGGAGATAATGTAAGTTCAT 159 consensus_1673#1 TAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCAT 180 ******** ******* * ****** * * * * ** **************** *** consensus_1673#0 GAAATCCATCTNG-AAAACGACG-AATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCC 217 consensus_1673#1 GAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTC 240 *********** * ********* *** **** **************** ** *** * consensus_1673#0 TCGAAGGTGGTATNTGTTTTCCATTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCC 277 consensus_1673#1 TCGAAGTTGGTATNTGTNT-CCATTGNTAAATTGGGTA---------------------- 277 ****** ********** * ****** * ******* consensus_1673#0 AANCAGGCCCTAAGGAANNATTTTTTTTCAANTNN 312 consensus_1673#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||