cluster # 1722

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Schistosoma mansoni
cluster # 1722 cluster # 1722 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1722#0 length = 429 sequences # 1

consensus_1722#1 length = 139 sequences # 1

consensusID : consensus_1722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTAATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGTTTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTGTTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAATCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAACTGTCGTCGG]

[+] EMBL CD127053             [TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTAATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGTTTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTGTTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAATCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAACTGTCGTCGG]




>consensus_1722#0
TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTA
ATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAG
AACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGAC
CTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGT
TTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTG
TTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAA
TCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAAC
TGTCGTCGG

consensusID : consensus_1722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [CGCGGTCGCTCTAGGGATCCCCAAACCCTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGG]

[+] EMBL CD062186             [CGCGGTCGCTCTAGGGATCCCCAAACCCTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGACCTCAAGATTACGG]




>consensus_1722#1
CGCGGTCGCTCTAGGGATCCCCAAACCCTTCTTAAAATGCAAACGATAGTCTTCGAGACT
TGTCAGAACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAG
ACTGACCTCAAGATTACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1722#0      TGATAGGCAATCCGGNAGTGTAGAGAATAGCTCAATCGGTGAGATGTGAAGCCATTGGTA 60
consensus_1722#1      -----------------------------------------------------CGCGGTC 7
                                                                              *** 

consensus_1722#0      ATTTCATAAATTATGAAACCATTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAG 120
consensus_1722#1      GCTCTAGGGATCCCCAAACC-CTTCTTAAAATGCAAACGATAGTCTTCGAGACTTGTCAG 66
                        *  *   **    *****  **************************************

consensus_1722#0      AACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGAC 180
consensus_1722#1      AACAGCTTACCGTAATTATCAAATGCAGCTATTGCTCTCAACTCTGTATCACAGACTGAC 126
                      ************************************************************

consensus_1722#0      CTCAAGATTACGGGACATTTACGTAAGGATTGGAAAATTGTGAATTTAAGGGACTTGGGT 240
consensus_1722#1      CTCAAGATTACGG----------------------------------------------- 139
                      *************                                               

consensus_1722#0      TTATCGCCGTACATGCAATCTTCTGGTAAATACAGGATGGGAAGAGACCTTCATGTGGTG 300
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      TTCGACTCTGCTGGTCGTGAAGTTTTGTGTCAATTTTGAAAGGCGTACTAAAGAAGTAAA 360
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      TCAACCTTATATAGGGTCTCTATTCGAACACTTGTAGACGAGTCAGAACTTGTGGTGAAC 420
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      TGTCGTCGG 429
consensus_1722#1      ---------