These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGATCGACAGTTGTGAGCTTAGAGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACAAACAACACCTTGCTTCTAACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAATTATCAATCCCATGTCTGACTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCCAATGTGTCGATCGCAAAAACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCACGAGTAGTATCAGCA] [+] EMBL CD062497 [GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGATCGACAGTTGTGAGCTTAGAGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACAAACAACACCTTGCTTCTAACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAATTATCAATCCCATGTCTGACTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCCAATGTGTCGATCGCAAAAACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCACGAGTAGTATCAGCA] consensusID : consensus_1782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 171 fasta sequence [TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAATAATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGATCGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT] [+] EMBL CD158724 [TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAATAATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGATCGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1782#0 ------------------------------------------------------------ consensus_1782#1 TACTTAAAAACCTAGGCATACTTAATCACCAGGATAGCACAGGTTTATTGTTTGAGAAAT 60 consensus_1782#0 ------------------GCTCAAAGCTTTGAAGATGCAGAGCCGGTGGATTCTGTGGAT 42 consensus_1782#1 AATGGTATTTATTTGGCAGCTCAAACCTTTAGAGATGCAGAGCAGCTGTATTCTGTGGAT 120 ******* **** *********** * ** *********** consensus_1782#0 CGACAGTTGTGAGCTTAGAGTAAAAACCACCGCTATCATAGAAACGATAATACCAGCACA 102 consensus_1782#1 CGACAGTTGTGAGCTTAGAGCAAAAACCACCGCTATCATAGAAACGATAAT--------- 171 ******************** ****************************** consensus_1782#0 AACAACACCTTGCTTCTAACGTCGCAGTGTTTGATAGCGATTCACAGATTACCGACAAAT 162 consensus_1782#1 ------------------------------------------------------------ consensus_1782#0 TATCAATCCCATGTCTGACTGGTCGTAAGTACTGATCGGTTAGTGTCGACATTGTTGTCC 222 consensus_1782#1 ------------------------------------------------------------ consensus_1782#0 AATGTGTCGATCGCAAAAACGTTTTCGACTACGAAACAACGATGGAGGTTTGATTCTCAC 282 consensus_1782#1 ------------------------------------------------------------ consensus_1782#0 GAGTAGTATCAGCA 296 consensus_1782#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||