These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAACTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAATCTACTGATTTACCATAAGGTTTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGTACCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATCAGCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATAAATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATACCAGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCATTGGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAACAAGAAAT] [+] EMBL CD062663 [CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAACTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAATCTACTGATTTACCATAAGGTTTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGTACCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATCAGCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATAAATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATACCAGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCATTGGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAACAAGAAAT] consensusID : consensus_1820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TTCTCTCCATAAATTTTCCACTGTGGTAAATCCCGGTTACATTGTTAATTCCCCCCCGAATTACTTTTTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAATTTTTCCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTAATCTCCTTTTCACCATCTGAACCACATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAATGAGAAACGGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCACTGGCCGA] [-] EMBL AI413079 [TTCTCTCCATAAATTTTCCACTGTGGTAAATCCCGGTTACATTGTTAATTCCCCCCCGAATTACTTTTTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAATTTTTCCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTAATCTCCTTTTCACCATCTGAACCACATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAATGAGAAACGGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCACTGGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1820#0 CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAA 60 consensus_1820#1 ------------------------------------------------------------ consensus_1820#0 CTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCA 120 consensus_1820#1 ------------------------------------------------TTCTCTCCATAA 12 * ** * * * consensus_1820#0 CCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAA 180 consensus_1820#1 ATTTTCCACTGTGGTAAATCCCG----GTTACAT-TGTTAATTCCCCCCCGAATTACTTT 67 ** * * ** * * ** *** * * ** * ** * ** consensus_1820#0 TCTACTGATTTACCATAAGGT-TTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGT 239 consensus_1820#1 TTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAATTTT---T 124 * ** * ** **** ** ** ** * ** ** ** * *** * * consensus_1820#0 ACCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATC 299 consensus_1820#1 CCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTA-ATCTCCTTTTCACCATCTGAA-CC 182 ** * ** * * * * * * * * * **** *** ** ** * consensus_1820#0 AGCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATA 359 consensus_1820#1 A--CATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAAT---GAGA 237 * ** * * * * *** * *** ***** * ** **** ** * consensus_1820#0 AATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATAC 419 consensus_1820#1 AACGGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATA--------TAT 289 ** * *** * * **** * * * ** * ** consensus_1820#0 CAGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCAT 479 consensus_1820#1 TTGCAAA--------TAAATCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCAC 341 **** ***** ** * ** *** ** * * *** ** consensus_1820#0 TGGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAA 539 consensus_1820#1 TGGCCGA----------------------------------------------------- 348 ***** * consensus_1820#0 CAAGAAAT 547 consensus_1820#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||