These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGATACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTCATATTTTATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAACCTGGGCGGCCATATTGTGGGTCTCATGGGTTCAAATCTCACCCACGAGGCGAGATCATGGATGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAGGGATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAATCTTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTATATTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATTTATGATTGTTTTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTGTTCATGTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGTACCGTTAATACATTGTGACATCTTC] [+] EMBL CD079263 [CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGATACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTCATATTTTATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAACCTGGGCGGCCATATTGTGGGTCTCATGGGTTCAAATCTCACCCACGAGGCGAGATCATGGATGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAGGGATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAATCTTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTATATTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATTTATGATTGTTTTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTGTTCATGTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGTACCGTTAATACATTGTGACATCTTC] consensusID : consensus_1851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATGATCTCGCACTCGCGAGATTCAAACCCAGGACCTATCAGTCTAGCTTCAATTGATTCACGCTTTCAACTATATAATAATGTTATCTAATTAAGCCAATTTTTATCTCTTCTACATAAATTAACTTATATTTTCATCATGGTATGGACGTGTTAAGTGTACTACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGTCAAACCTCCAAGTATCCCAAAATGTCTACAACTGAGCGACTAAACAAACGGAAACAACCCTAATTACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTTACAATGAATACTGTTATCGATCAGATTACGTTTCGAGGATATAATTGGTCTAAAAGAATTGCTGGCCGGTTGGTTGTTTCGCTCATAAACCTAATAAATGAATTCAA] [+] EMBL CD093246 [GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATGATCTCGCACTCGCGAGATTCAAACCCAGGACCTATCAGTCTAGCTTCAATTGATTCACGCTTTCAACTATATAATAATGTTATCTAATTAAGCCAATTTTTATCTCTTCTACATAAATTAACTTATATTTTCATCATGGTATGGACGTGTTAAGTGTACTACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGTCAAACCTCCAAGTATCCCAAAATGTCTACAACTGAGCGACTAAACAAACGGAAACAACCCTAATTACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTTACAATGAATACTGTTATCGATCAGATTACGTTTCGAGGATATAATTGGTCTAAAAGAATTGCTGGCCGGTTGGTTGTTTCGCTCATAAACCTAATAAATGAATTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1851#0 CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGA 60 consensus_1851#1 -----------------------GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATG 37 * * ** * * * * ** ** * consensus_1851#0 TACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTC 120 consensus_1851#1 ATCTCGCACTC---GCGAGATTCAAACCCAGGACCTATCAGTC-TAGCTTCAATTGATTC 93 * * ** * ** * *** *** ** ** ********* consensus_1851#0 ATATTTT-ATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAAC 179 consensus_1851#1 ACGCTTTCAACTATATAAT----AATGTTATCTAATTAA---------GCCAATTTTTAT 140 * *** * * ***** * * * **** * **** * consensus_1851#0 CTGGGCGGCCATATTGTGGGTCTCATGGGTTCAA-ATCTCACCCACGAGGCGAGATCATG 238 consensus_1851#1 CT---CTTCTACATAAATTAACTTATATTTTCATCATGGTATGGACGTGTTAAGTGTACT 197 ** * * * ** ** ** **** ** * *** * ** * consensus_1851#0 GATGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAG 298 consensus_1851#1 -ACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGTCAA-----ACCTCCAA 251 * ** * * * * * * * * ** * * * * ***** * **** consensus_1851#0 GGATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAA 358 consensus_1851#1 GTAT--CCCAAAATGTCTA----CAACTGAGCGACTAAACAAACGGAAACAACCCTAATT 305 * ** ** ***** *** * * *** * ** ** * consensus_1851#0 TCTTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTA 418 consensus_1851#1 ACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTTACAAT 365 ** * * * ** ** ** * * *** * * * consensus_1851#0 TATTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATT 478 consensus_1851#1 GAATACTGTTA--------TCGATCAG----ATTACGTTTCGAGGATATAATTGGTCTAA 413 * ******** **** ** ** * ** * * * **** ** consensus_1851#0 TATGATTGTT---TTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTG 535 consensus_1851#1 AAGAATTGCTGGCCGGTTGGTTGTTTCGCTCATAAACCTA-ATAAATGAATTCAA----- 467 * **** * *** * * ** * ** *** *** ** *** consensus_1851#0 TTCATGTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGT 595 consensus_1851#1 ------------------------------------------------------------ consensus_1851#0 ACCGTTAATACATTGTGACATCTTC 620 consensus_1851#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||