cluster # 187

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Schistosoma mansoni
cluster # 187 cluster # 187 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_187#0 length = 567 sequences # 1

consensus_187#1 length = 330 sequences # 1

consensusID : consensus_187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [TATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACAAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGATATATAAATAATAAGTTAGAATGATAATAGTAGTTAGTTTTATTGATTTATAATAGAATAATAATATATTATATGGCAAAATAATCACACTAAAGTTATATATTCTCATCCAATGCACAGTCATACATTTTTCGATAGAAATAACAACTTTTCCTCCTCGGAAATACACAAGTCCTATCATCAGTACCATTTTGAAATATTTAATTAACTGAGGATTGACTTCTTTTTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTTTGTCCGATATAGGACTCAACAAAAAACAATCAACAAAAAAAACAGGAATTGTTTCACTAACAAAGAATTCAAGTGTTTCGTTTCACCTGCAACCATCCTAGACACCAACACT]

[+] EMBL CD074369             [TATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACAAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGATATATAAATAATAAGTTAGAATGATAATAGTAGTTAGTTTTATTGATTTATAATAGAATAATAATATATTATATGGCAAAATAATCACACTAAAGTTATATATTCTCATCCAATGCACAGTCATACATTTTTCGATAGAAATAACAACTTTTCCTCCTCGGAAATACACAAGTCCTATCATCAGTACCATTTTGAAATATTTAATTAACTGAGGATTGACTTCTTTTTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTTTGTCCGATATAGGACTCAACAAAAAACAATCAACAAAAAAAACAGGAATTGTTTCACTAACAAAGAATTCAAGTGTTTCGTTTCACCTGCAACCATCCTAGACACCAACACT]




>consensus_187#0
TATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTT
TGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACAAGAATTAAAT
GGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATA
AACTATTAGTGTGATATATAAATAATAAGTTAGAATGATAATAGTAGTTAGTTTTATTGA
TTTATAATAGAATAATAATATATTATATGGCAAAATAATCACACTAAAGTTATATATTCT
CATCCAATGCACAGTCATACATTTTTCGATAGAAATAACAACTTTTCCTCCTCGGAAATA
CACAAGTCCTATCATCAGTACCATTTTGAAATATTTAATTAACTGAGGATTGACTTCTTT
TTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTTTGTCCGATATAGGACTCAACAAAAA
ACAATCAACAAAAAAAACAGGAATTGTTTCACTAACAAAGAATTCAAGTGTTTCGTTTCA
CCTGCAACCATCCTAGACACCAACACT

consensusID : consensus_187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGATGGTAAAAGGAGGTAGTTTATTGATTTAAATGGAATATAATTTTTTTATGGGAAAATATCCACCCAAGGTTTATATCTCCCCCCATGGCAG]

[+] EMBL AI438713             [TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGATGGTAAAAGGAGGTAGTTTATTGATTTAAATGGAATATAATTTTTTTATGGGAAAATATCCACCCAAGGTTTATATCTCCCCCCATGGCAG]




>consensus_187#1
TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTA
TAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAAC
CACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAA
ACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGAT
GGTAAAAGGAGGTAGTTTATTGATTTAAATGGAATATAATTTTTTTATGGGAAAATATCC
ACCCAAGGTTTATATCTCCCCCCATGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_187#0      ------------------------TATGTATATATTAGAAAAAAAAACAATAATGTAGTA 36
consensus_187#1      TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTA 60
                                             ************************************

consensus_187#0      TAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAAC 96
consensus_187#1      TAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAAC 120
                     ************************************************************

consensus_187#0      CACAAAAAAAAACAAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAA 156
consensus_187#1      CACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAA 180
                     ************* **********************************************

consensus_187#0      ACACAAGATGGACTTGTATCAATAAACTATTAGTGTG-ATATATAAATAATAAGTTAGAA 215
consensus_187#1      ACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGA- 239
                     ************************************* ********************* 

consensus_187#0      TGATAATAGTAGTTAGTTTTATTGATTTATAATAGAATAATAATATATTATATGGCAAAA 275
consensus_187#1      TGGTAAAAGGAGGTAGTTT-ATTGATTTA-AATGGAATA-TAAT-TTTTTTATGGGAAAA 295
                     ** *** ** ** ****** ********* *** ***** **** * ** ***** ****

consensus_187#0      TAATCACACTAAAGTTATATATTCTCATCCAATGCACAGTCATACATTTTTCGATAGAAA 335
consensus_187#1      TATCCAC-CCAAGGTT-TATATCTCCCCCCATGGCAG----------------------- 330
                     **  *** * ** *** *****   *  ***  ***                        

consensus_187#0      TAACAACTTTTCCTCCTCGGAAATACACAAGTCCTATCATCAGTACCATTTTGAAATATT 395
consensus_187#1      ------------------------------------------------------------
                                                                                 

consensus_187#0      TAATTAACTGAGGATTGACTTCTTTTTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTT 455
consensus_187#1      ------------------------------------------------------------
                                                                                 

consensus_187#0      TGTCCGATATAGGACTCAACAAAAAACAATCAACAAAAAAAACAGGAATTGTTTCACTAA 515
consensus_187#1      ------------------------------------------------------------
                                                                                 

consensus_187#0      CAAAGAATTCAAGTGTTTCGTTTCACCTGCAACCATCCTAGACACCAACACT 567
consensus_187#1      ----------------------------------------------------