These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGCAGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAGCAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTCTTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAGAATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATGAAAATCACTGGTCTTCCGCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTACCGACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCTTCGTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTCCTATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTTGAAAGTTT] [+] EMBL CD194566 [CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGCAGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAGCAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTCTTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAGAATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATGAAAATCACTGGTCTTCCGCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTACCGACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCTTCGTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTCCTATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTTGAAAGTTT] consensusID : consensus_1874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [CGGGTTTATCATATTCTGAAGGTGTAGTGTTTGAGAACTTCATTTCTTTAGTTAAAAGTTCTCCATCGGAAGAAGAGTTGTCATTTTGATGAGTTGAAAATATACCATCATCATCATCATTAGGTTGATGTATGAATAGAAGCGGGTTGGCACATTTATCGTCCAAGGTAGGCACGATGGGTTTGTTAGAACTGGAGTCGGTA] [+] EMBL CD195743 [CGGGTTTATCATATTCTGAAGGTGTAGTGTTTGAGAACTTCATTTCTTTAGTTAAAAGTTCTCCATCGGAAGAAGAGTTGTCATTTTGATGAGTTGAAAATATACCATCATCATCATCATTAGGTTGATGTATGAATAGAAGCGGGTTGGCACATTTATCGTCCAAGGTAGGCACGATGGGTTTGTTAGAACTGGAGTCGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1874#0 CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGC 60 consensus_1874#1 ------------------------------------------------------------ consensus_1874#0 AGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAG 120 consensus_1874#1 ------------------------------------------------------------ consensus_1874#0 CAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTC 180 consensus_1874#1 -----------CGGGTTTAT---CATATTCT----GAAGGTGTA-GTGTTTGAGAACTTC 41 ** * * * * * ** **** * * *** * * *** ** consensus_1874#0 TTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAG 240 consensus_1874#1 AT--TTCTTTAGTTAAAAGTTCTCCATCGGAAGAAG--AGTTGTCATTTTGATG------ 91 * * * * *** ** * * ***** *** **** ********* consensus_1874#0 AATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATG 300 consensus_1874#1 AGTTGAAAATATACCATCATCATCATCAT-TAGGTTGATGTA-TGAATAGAAGCGGGTTG 149 * * *** * *** * * * * *** * * ** * * * *** ** consensus_1874#0 AAAATCACTGGTCTTCC--GCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTAC 358 consensus_1874#1 GCA--CATTTATCGTCCAAGGTAGGCACGATGGGTTTGTTAGAACTGGAGTCGGTA---- 203 * ** * ** *** * * ** ** * **** **** * * * consensus_1874#0 CGACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCT 418 consensus_1874#1 ------------------------------------------------------------ consensus_1874#0 TCGTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTC 478 consensus_1874#1 ------------------------------------------------------------ consensus_1874#0 CTATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTT 538 consensus_1874#1 ------------------------------------------------------------ consensus_1874#0 GAAAGTTT 546 consensus_1874#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||