cluster # 1902

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Schistosoma mansoni
cluster # 1902 cluster # 1902 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1902#0 length = 366 sequences # 1

consensus_1902#1 length = 278 sequences # 1

consensusID : consensus_1902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGAAAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTTTGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGAAGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAGTCACTCAAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGGCTGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAACAACAAGA]

[+] EMBL SMAA25564            [AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGAAAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTTTGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGAAGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAGTCACTCAAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGGCTGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAACAACAAGA]




>consensus_1902#0
AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGA
AAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTT
TGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGA
AGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAG
TCACTCAAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGGC
TGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAACA
ACAAGA

consensusID : consensus_1902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGTAATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAATTCTGAGAGTGCACGAGTACCGAAGTTAGTGTAAGTCAATGGAACGAGGCACTAGTAGACGAATACAGGGTCGGTCACGAGCGCTAACTACAGCAAACAACTGTAACTTAGCCACTCTAAGACTTGAAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC]

[+] EMBL SMAA25563            [AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGTAATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAATTCTGAGAGTGCACGAGTACCGAAGTTAGTGTAAGTCAATGGAACGAGGCACTAGTAGACGAATACAGGGTCGGTCACGAGCGCTAACTACAGCAAACAACTGTAACTTAGCCACTCTAAGACTTGAAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC]




>consensus_1902#1
AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGT
AATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAATTCTGA
GAGTGCACGAGTACCGAAGTTAGTGTAAGTCAATGGAACGAGGCACTAGTAGACGAATAC
AGGGTCGGTCACGAGCGCTAACTACAGCAAACAACTGTAACTTAGCCACTCTAAGACTTG
AAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1902#0      AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGA 60
consensus_1902#1      AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGT 60
                      ****** *********** **************************************** 

consensus_1902#0      AAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTT 120
consensus_1902#1      AATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAA---TTC 117
                      ** ********************************* *  *   ******  **   ** 

consensus_1902#0      TGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGA 180
consensus_1902#1      TGAGAGTGC-ACGAGTACC--GAAGTTAGTGT-AAGTCAA-TGGAA--CGAGGCACTAGT 170
                      ******* * ***** * *  ******* *** ******* *****   ** ******* 

consensus_1902#0      AGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAG 240
consensus_1902#1      AGACGAATA--CA-GGGTCGGTCA-CGAGCGCTAACTACAGCAAA-CAACTGTAACTTAG 225
                      ********   ** * ******** * ***** *** ******** ****** *******

consensus_1902#0      TCACTC-AAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGG 299
consensus_1902#1      CCACTCTAAGACTTGAAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC------- 278
                       ***** *********** *** * ***  ** ******* ***********        

consensus_1902#0      CTGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAAC 359
consensus_1902#1      ------------------------------------------------------------
                                                                                  

consensus_1902#0      AACAAGA 366
consensus_1902#1      -------