These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GGTTATTCCCAGTTTAGGTTCTGAGTTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAGCCGTTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAAATTCTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGTAGAGCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTTAGATATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGACAAAATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAAACGTCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATATGA] [+] EMBL CD080377 [GGTTATTCCCAGTTTAGGTTCTGAGTTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAGCCGTTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAAATTCTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGTAGAGCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTTAGATATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGACAAAATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAAACGTCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATATGA] consensusID : consensus_1951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCTTGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG] [-] EMBL CD145512 [GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCTTGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGGTCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGCTAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATCTTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAACTCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1951#0 -------------------------------------------------------GGTTA 5 consensus_1951#1 GGTTTTCAACTTAGGTTATTCCCAGTTTAGGTTCTGAGTGTAAGCTAATCCAAATAGTCT 60 ** consensus_1951#0 TTCCCAGTTTAGGTTCTGAGT--TACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGG 63 consensus_1951#1 TGTTTACGTTCAACTCTTGCTAGTACTGTTGTTTTTGCCTTGTAGACTGTTTACTTCTGG 120 * * ** *** * ************************************* consensus_1951#0 TCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGC 123 consensus_1951#1 TCATAAGACCACTTAAATTGCTGGCCGTTTACTTATCGACCTGTTTTCTTACAATTCTGC 180 ************************************************************ consensus_1951#0 TAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATC 183 consensus_1951#1 TAACACCACGGCCTAAAATCTTTAAAAGGGCTGTAACTTCTGAAAATTACCGGTTGAATC 240 ************************************************************ consensus_1951#0 TTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAAC 243 consensus_1951#1 TTGGTCTTGAGTGATACATAGCAATCACGCACATTCCACCATGTCTAGCCCACTGAAAAC 300 ************************************************************ consensus_1951#0 TCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAACAGCCG 303 consensus_1951#1 TCTTTGCACAGTGTTTATGTTCTATTGCTTCTCAATATGCCTTACATTTTTCAANCAGCG 360 ****************************************************** ** consensus_1951#0 TTGTATAAAAATGTTCCCGTATCCACTCTCAATCACTTTACTGCATATGATCATTAAATT 363 consensus_1951#1 ------------------------------------------------------------ consensus_1951#0 CTTATTATCATGGTTCGTAAGGTGTTCGCTATCGTGGTTGTATAATTATCCAAGAGTAGA 423 consensus_1951#1 ------------------------------------------------------------ consensus_1951#0 GCTTCCGTGGGCGAAGTATGTGAGGGTTGTTGCTATCTCCGGGATCTCTAGTGCTTTAGA 483 consensus_1951#1 ------------------------------------------------------------ consensus_1951#0 TATTGGTTGTTCAAATTGGAGTTTTGAGTTCATTACTGTATCATTGTACACAATGACAAA 543 consensus_1951#1 ------------------------------------------------------------ consensus_1951#0 ATCTACCAGCGTCATTTTTATTGTGATGTTTTCTGTCTTACTAAAACTGGAGAAAAAACG 603 consensus_1951#1 ------------------------------------------------------------ consensus_1951#0 TCCATCTTTAGCCATCATTGTCATCCTAATTACCTGCGGGCTNTNTATGTTTTCATATGA 663 consensus_1951#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||