These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGTGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGACCTAAATATTTGGTAATTAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAAATTATGCGTCACGATCCTCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATGGGTGCAAATGCAGCGTACATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATGCAATTAGCTATCAAAGAGGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACTGNGTTTAATTTCGATGTTTATATGCATCGTGGGGCTTGAGCAT] [+] EMBL CD080617 [GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGTGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGACCTAAATATTTGGTAATTAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAAATTATGCGTCACGATCCTCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATGGGTGCAAATGCAGCGTACATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATGCAATTAGCTATCAAAGAGGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACTGNGTTTAATTTCGATGTTTATATGCATCGTGGGGCTTGAGCAT] consensusID : consensus_1981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC] [+] EMBL CD188539 [TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAATTCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCACTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAAGGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTCCTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGTGGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1981#0 -GCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAAT 59 consensus_1981#1 TGCTGAGATACACGAAGGTTTTACCTTTAAGTGTTGGGAGGAATTCCGTGGTTATTAAAT 60 *********************************************************** consensus_1981#0 TCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAA-ACTACTTATGGACCA 118 consensus_1981#1 TCTTTTCTACTGCTAGCCCAACCAACACTACTCAGACCACCAAAGACTACTTATGGACCA 120 ******************************************** *************** consensus_1981#0 CTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAA 178 consensus_1981#1 CTATCTGATGAAGATCGAATATTCACTAATTTATACGGTCGACATGATTGGCGTCTTAAA 180 ************************************************************ consensus_1981#0 GGTGCCATGCAACGT---------------GGTCACTGGTATAAAACAAAAGAGATAGTC 223 consensus_1981#1 GGTGCCATGCAACGTTCATTTTAATAACAGGGTCACTGGTATAAAACAAAAGAGATAGTC 240 *************** ****************************** consensus_1981#0 CTTAAAGGTAGTGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGT 283 consensus_1981#1 CTTAAAGGTAGAGATTGGATCATTGAGGAAATTAAGAAATCTGGACTACGTGGTCGTGGT 300 *********** ************************************************ consensus_1981#0 GGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAACCAAGTGATGGCAGA 343 consensus_1981#1 GGTGCTGGCTTCCCTTCGGGCATGAAATGGAGTTTTATGAATAAAC-------------- 346 ********************************************** consensus_1981#0 CCTAAATATTTGGTAATTAACGCTGATGAAGGTGAACCTGGTACATGCAAAGATAGAGAA 403 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 ATTATGCGTCACGATCCTCATACACTTATTGAAGGTTGTCTTATAGCTGGAAAAGCTATG 463 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 GGTGCAAATGCAGCGTACATTTATATTCGTGGTGAATTTTATAATGAAGCATCAAATATG 523 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 CAATTAGCTATCAAAGAGGCTTATGAAGCTGGTTTCCTAGGGAAAAATGCATGTGGCACT 583 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 GNGTTTAATTTCGATGTTTATATGCATCGTGGGGCTTGAGCAT 626 consensus_1981#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||