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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence
[CGGAGCCATTAATTCGGCACGCAGGGTTAGTTACTACTGACAGTAGCCATGGTGAAGGTTATTCATGGGCTGAATTTGTGCGATCGCCTAGATCAGCTGCGGGTTGTGCTAATGCATTTGGTTTAAATGAAAGTATTTATCCAGAAAGTGCAACAACATCAGAAAACAGTGATGAAACAGGGGAAAAAATAAAAACATCGATAATATCATCATTTGATGACCCAAACAAAGACCATGAATTTGGTTATACCCACCCAGTTTCATATCCAAAATTCTTATATCGACCTGGTGGTAAACAGGCAAGTTCGGCAGCTATTGTCATGACATCGTCTGATCCAAAGTTTAAAGGCTACGGTCATTTTCGCGGTTTCATTAGTACACGTGTGCCTAAACGAGGCGATCTAGTTCATGCAGGTTTTGCAAATCTCCGCAGTCCAGAAAGCAAATTATTTGGATGTGTTATGCCATATGGTTGTGAAGCTTACTCACATTTAATTATCAGATATCGTGGAGATGGTCGAAAATACCAAATTGTTGTGCTACCTCGTGCAGAATGGGATTTTTACCGTTTTAATACACATCAGTTTACATTGTACACTCGAGGTGGACCATATTGGCAAATAGCTAAAATCCCATTATCCAAATTTTATCATACGAGTTCAAGTATTATGCATTATAGACAATTTCCTGTGGATCTAGGACGTATGCGCCTTCTTTCATTTACTATAATGGATGATATTGAGGGGCCATTTAGTTTGGAGTTGGACTATATCGGTTTATATTTTGATGAACAACAGAGTGAGGTCTTTGATTATGAACAATATAGCANATCAGGAACAGTACTCTAAATTATACT]
[+] EMBL CD081487 [CGGAGCCATTAATTCGGCACGCAGGGTTAGTTACTACTGACAGTAGCCATGGTGAAGGTTATTCATGGGCTGAATTTGTGCGATCGCCTAGATCAGCTGCGGGTTGTGCTAATGCATTTGGTTTAAATGAAAGTATTTATCCAGAAAGTGCAACAACATCAGAAAACAGTGATGAAACAGGGGAAAAAATAAAAACATCGATAATATCATCATTTGATGACCCAAACAAAGACCATGAATTTGGTTATACCCACCCAGTTTCATATCCAAAATTCTTATATCGACCTGGTGGTAAACAGGCAAGTTCGGCAGCTATTGTCATGACATCGTCTGATCCAAAGTTTAAAGGCTACGGTCATTTTCGCGGTTTCATTAGTACACGTGTGCCTAAACGAGGCGATCTAGTTCATGCAGGTTTTGCAAATCTCCGCAGTCCAGAAAGCAAATTATTTGGATGTGTTATGCCATATGGTTGTGAAGCTTACTCACATTTAATTATCAGATATCGTGGAGATGGTCGAAAATACCAAATTGTTGTGCTACCTCGTGCAGAATGGGATTTTTACCGTTTTAATACACATCAGTTTACATTGTACACTCGAGGTGGACCATATTGGCAAATAGCTAAAATCCCATTATCCAAATTTTATCATACGAGTTCAAGTATTATGCATTATAGACAATTTCCTGTGGATCTAGGACGTATGCGCCTTCTTTCATTTACTATAATGGATGATATTGAGGGGCCATTTAGTTTGGAGTTGGACTATATCGGTTTATATTTTGATGAACAACAGAGTGAGGTCTTTGATTATGAACAATATAGCANATCAGGAACAGTACTCTAAATTATACT]
consensusID : consensus_2031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[GCATGGTATTACTGTTACTTTACAAAATGAAAAATTTGTTAACTACACGATCAACTAATCTTTCGATTTTCTTAACAGCCAAACATGGTATTTCACTACATACACAGTCAAATGCATTATATGCTAATAAATCTGGTCATTTATTTAGGCGTTTAATGAATGTTCAATATGTGGAACAATTGGAACCTAAATTGCCAGGTCCTATATATGCATTAGTAAAATTGTGGTTTAAAATAAGACCTTTAAAAGCAGAACTAGCAGATCTTCGTCGTCGTATTCAACGTAATAAAGAAGGATTTGAGACAAAAATTCACTCAAGAACACGTTATTTTGTTAGATTTCCGTTTTTAACAGATGAAGAGTTTTCAAACTGGTTAGTTACTACTGACAGTAGCCATGGTGAAGGTTATTCATGGGCTGAATTTGTGCGATCGGCTAAATCAACTGCGGGT]
[+] EMBL CD084413 [GCATGGTATTACTGTTACTTTACAAAATGAAAAATTTGTTAACTACACGATCAACTAATCTTTCGATTTTCTTAACAGCCAAACATGGTATTTCACTACATACACAGTCAAATGCATTATATGCTAATAAATCTGGTCATTTATTTAGGCGTTTAATGAATGTTCAATATGTGGAACAATTGGAACCTAAATTGCCAGGTCCTATATATGCATTAGTAAAATTGTGGTTTAAAATAAGACCTTTAAAAGCAGAACTAGCAGATCTTCGTCGTCGTATTCAACGTAATAAAGAAGGATTTGAGACAAAAATTCACTCAAGAACACGTTATTTTGTTAGATTTCCGTTTTTAACAGATGAAGAGTTTTCAAACTGGTTAGTTACTACTGACAGTAGCCATGGTGAAGGTTATTCATGGGCTGAATTTGTGCGATCGGCTAAATCAACTGCGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2031#0 CGGAGCCATTAATTCGGCACGCAGGGTTAGTTACTACTGACAGTAGCCATGGTGAAGGTT 60
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 ATTCATGGGCTGAATTTGTGCGATCGCCTAGATCAGCTGCGGGTTGTGCTAATGCATTTG 120
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 GTTTAAATGAAAGTATTTATCCAGAAAGTGCAACAACATCAGAAAACAGTGATGAAACAG 180
consensus_2031#1 -----------------------------GCA-TGGTATTACTGTTACTTTACAAAATGA 30
*** ** * * * ***
consensus_2031#0 GGGAAAAAATAAAAACATCGATAATATCATCATTTGATGACCCAAACAA--AGACCATGA 238
consensus_2031#1 AAAATTTGTTAACTACA-CGATCAACTAATCTTTCGATTTTCTTAACAGCCAAACATGGT 89
* *** *** **** * * *** ** *** * **** * ** *
consensus_2031#0 ATTTGGTTATACCCACCCAGTTTCATATCCAAAATTCTTATATCGACCTGGTGGTAAACA 298
consensus_2031#1 ATTTCACTACATACAC--AGTCAAATGCATTATATGCTAATA--AATCTGGTCATTTATT 145
**** ** * *** *** ** * ** ** *** * ***** * *
consensus_2031#0 GGCAAGTTCGGCAGCTATTGTCATGACATCGTCTGATCCAAAGTTTAAAGGCTACGGTCA 358
consensus_2031#1 TAGGCGTTTAATGAATGTT--CAATATGTGGAACAATTGGAACCTAAATTGCCA-GGTCC 202
*** * ** ** * * * ** ** * ** ** * ****
consensus_2031#0 TTTTCGCGGTTTCATTAGTACACGTGTGCCTAAACGAGGCGATCTAGTTCATGCAGGTTT 418
consensus_2031#1 TATATATG----CATTAGTAAAATTGTGGTTTAA-AATAAGACCTT-TAAAAGCAGAACT 256
* * * ******** * **** * ** * ** ** * * **** *
consensus_2031#0 TGCAAATCTCCGCAGTCCAGAAAGCAAATTATTTGGATGTGTTATGCCATATGGTTGTGA 478
consensus_2031#1 AGCAGATCTTCGTCGTC--GTATTCAACGTAATAAAGAAGGATTTGAGACAAAAAT-TCA 313
*** **** ** *** * * *** ** * * * ** * * * * *
consensus_2031#0 AGCTTACTCACATTTAATTATCAGATATCG--TGGAGATGGTCGAAAA--TACCAAATTG 534
consensus_2031#1 CTCAAGAACACGTTATTTTGTTAGATTTCCGTTTTTAACAGATGAAGAGTTTTCAAACTG 373
* *** ** ** * **** ** * * * *** * * **** **
consensus_2031#0 TTGTGCTACCTCGTGCAGAATGGGATTTTTACCGTTTTAATACACATCAGTTTACATTGT 594
consensus_2031#1 GTTAGTTACTACTGACAGTA-GCCATGGTGAAGGT-----TATTCATGGGCTGAATTTGT 427
* * *** * *** * * ** * * ** ** *** * * * ****
consensus_2031#0 ACACTCGAGGTGGACCATATTGGCAAATAGCTAAAATCCCATTATCCAAATTTTATCATA 654
consensus_2031#1 GCGATCG-GCTAAATCAACT--GCGGGT-------------------------------- 452
* *** * * * ** * ** *
consensus_2031#0 CGAGTTCAAGTATTATGCATTATAGACAATTTCCTGTGGATCTAGGACGTATGCGCCTTC 714
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 TTTCATTTACTATAATGGATGATATTGAGGGGCCATTTAGTTTGGAGTTGGACTATATCG 774
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 GTTTATATTTTGATGAACAACAGAGTGAGGTCTTTGATTATGAACAATATAGCANATCAG 834
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 GAACAGTACTCTAAATTATACT 856
consensus_2031#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||