cluster # 2032

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Schistosoma mansoni
cluster # 2032 cluster # 2032 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2032#0 length = 886 sequences # 1

consensus_2032#1 length = 446 sequences # 1

consensusID : consensus_2032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 886
fasta sequence

                              [GGAGCCATNAATTCGGCACGCAGGGCGAATGGTATTTATTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACTTCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGATGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCATGGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAAGTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATCTAGATTACTTAGGCTTAAAACCGGTATTAATAAACCGGATTCCGTTGCTTGAATGTGAAGCCATTAAAATAATCTTTTCCCTAATATTGTTGAGAAACCTTCAGTCTTTTAAATGTCCTATGCTGTGGTAAATTTACGGAAGAAAACTGATCGAATAATATCGTTATTCAGTTTCTCCTATGTGGTTGTTGTGTTCGTCAATATTTCTGCATCATTATGGCTAAATCTAAATCAATATCCCACATTATACACAATGAAGATTATTTACAACTTTTATAGGAATTATAACTATATTTTACTCAAGTAGTCCATTTATTTCTTAGGAGTTATGTCATGTTGTCATATTTCTCCAGAAGCAAGTTTTTCTTTCAAGAACCCTGAAACTCTTGTGGATAAGACAGGTGTCGTTTTCGCTTTTTTTCGAATACATTCCAGTCTATTATTGTAAGCAGTCAATTTCTTTCTAAATTCATAATACTTTTGATTGTGATAACTATCATTTGAGTTTTCGAAGTACGTGTTTTTAAAAATACTTTACTTATTGGCTT]

[+] EMBL CD081511             [GGAGCCATNAATTCGGCACGCAGGGCGAATGGTATTTATTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACTTCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGATGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCATGGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAAGTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATCTAGATTACTTAGGCTTAAAACCGGTATTAATAAACCGGATTCCGTTGCTTGAATGTGAAGCCATTAAAATAATCTTTTCCCTAATATTGTTGAGAAACCTTCAGTCTTTTAAATGTCCTATGCTGTGGTAAATTTACGGAAGAAAACTGATCGAATAATATCGTTATTCAGTTTCTCCTATGTGGTTGTTGTGTTCGTCAATATTTCTGCATCATTATGGCTAAATCTAAATCAATATCCCACATTATACACAATGAAGATTATTTACAACTTTTATAGGAATTATAACTATATTTTACTCAAGTAGTCCATTTATTTCTTAGGAGTTATGTCATGTTGTCATATTTCTCCAGAAGCAAGTTTTTCTTTCAAGAACCCTGAAACTCTTGTGGATAAGACAGGTGTCGTTTTCGCTTTTTTTCGAATACATTCCAGTCTATTATTGTAAGCAGTCAATTTCTTTCTAAATTCATAATACTTTTGATTGTGATAACTATCATTTGAGTTTTCGAAGTACGTGTTTTTAAAAATACTTTACTTATTGGCTT]




>consensus_2032#0
GGAGCCATNAATTCGGCACGCAGGGCGAATGGTATTTATTCACGATGGTCATCTAAACAA
AATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACTTCTAAGAAACAGTGATGGTCCA
GACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGATGAAGATGAAGTATCAGGTGAT
AATGAAGGTAATCACAATAGTGATGAAGATGTGCTCATGGATGCTTATGCAGATCGTCAA
TTATTAAAACAAAATAATATATTAAATAGCAGACAAAAGTTTATTCCAAAAGTTAAAGGT
ACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATCTAGATTACTTAGGCTTAAAACC
GGTATTAATAAACCGGATTCCGTTGCTTGAATGTGAAGCCATTAAAATAATCTTTTCCCT
AATATTGTTGAGAAACCTTCAGTCTTTTAAATGTCCTATGCTGTGGTAAATTTACGGAAG
AAAACTGATCGAATAATATCGTTATTCAGTTTCTCCTATGTGGTTGTTGTGTTCGTCAAT
ATTTCTGCATCATTATGGCTAAATCTAAATCAATATCCCACATTATACACAATGAAGATT
ATTTACAACTTTTATAGGAATTATAACTATATTTTACTCAAGTAGTCCATTTATTTCTTA
GGAGTTATGTCATGTTGTCATATTTCTCCAGAAGCAAGTTTTTCTTTCAAGAACCCTGAA
ACTCTTGTGGATAAGACAGGTGTCGTTTTCGCTTTTTTTCGAATACATTCCAGTCTATTA
TTGTAAGCAGTCAATTTCTTTCTAAATTCATAATACTTTTGATTGTGATAACTATCATTT
GAGTTTTCGAAGTACGTGTTTTTAAAAATACTTTACTTATTGGCTT

consensusID : consensus_2032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [ACTCGGTTGTATACGTTTGTGCTGGTGCAAACGCAAATCAAGTGGTAATATGAGAAGAAATAAACGTGAAAGTAATAAAGTTTTCGCAGTCTCACCAAAAATATCTGCGAATGGTATTTATTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACTTCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGATGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCATGGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAAGTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATCTAGATTACTTAGGCTTAAAACCGGTA]

[+] EMBL CD083383             [ACTCGGTTGTATACGTTTGTGCTGGTGCAAACGCAAATCAAGTGGTAATATGAGAAGAAATAAACGTGAAAGTAATAAAGTTTTCGCAGTCTCACCAAAAATATCTGCGAATGGTATTTATTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACTTCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGATGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCATGGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAAGTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATCTAGATTACTTAGGCTTAAAACCGGTA]




>consensus_2032#1
ACTCGGTTGTATACGTTTGTGCTGGTGCAAACGCAAATCAAGTGGTAATATGAGAAGAAA
TAAACGTGAAAGTAATAAAGTTTTCGCAGTCTCACCAAAAATATCTGCGAATGGTATTTA
TTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACT
TCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGA
TGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCAT
GGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAA
GTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATC
TAGATTACTTAGGCTTAAAACCGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2032#0      ------------------------------------------------------------
consensus_2032#1      ACTCGGTTGTATACGTTTGTGCTGGTGCAAACGCAAATCAAGTGGTAATATGAGAAGAAA 60
                                                                                  

consensus_2032#0      -------------------GGAGCCATNAATTCGGCACGCAGG---GCGAATGGTATTTA 38
consensus_2032#1      TAAACGTGAAAGTAATAAAGTTTTCGCAGTCTCACCAAAAATATCTGCGAATGGTATTTA 120
                                         *    *      **  **   *     **************

consensus_2032#0      TTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACT 98
consensus_2032#1      TTCACGATGGTCATCTAAACAAAATTCAAAGAAAAATAAACAGGCTGGTTTTCGACCACT 180
                      ************************************************************

consensus_2032#0      TCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGA 158
consensus_2032#1      TCTAAGAAACAGTGATGGTCCAGACTATTTTGCTGAGCAAGAACTTGAAGATTATGTTGA 240
                      ************************************************************

consensus_2032#0      TGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCAT 218
consensus_2032#1      TGAAGATGAAGTATCAGGTGATAATGAAGGTAATCACAATAGTGATGAAGATGTGCTCAT 300
                      ************************************************************

consensus_2032#0      GGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAA 278
consensus_2032#1      GGATGCTTATGCAGATCGTCAATTATTAAAACAAAATAATATATTAAATAGCAGACAAAA 360
                      ************************************************************

consensus_2032#0      GTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATC 338
consensus_2032#1      GTTTATTCCAAAAGTTAAAGGTACCAATTCAAAGATTTCACATTCGAATTCTCTTTCATC 420
                      ************************************************************

consensus_2032#0      TAGATTACTTAGGCTTAAAACCGGTATTAATAAACCGGATTCCGTTGCTTGAATGTGAAG 398
consensus_2032#1      TAGATTACTTAGGCTTAAAACCGGTA---------------------------------- 446
                      **************************                                  

consensus_2032#0      CCATTAAAATAATCTTTTCCCTAATATTGTTGAGAAACCTTCAGTCTTTTAAATGTCCTA 458
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      TGCTGTGGTAAATTTACGGAAGAAAACTGATCGAATAATATCGTTATTCAGTTTCTCCTA 518
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      TGTGGTTGTTGTGTTCGTCAATATTTCTGCATCATTATGGCTAAATCTAAATCAATATCC 578
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      CACATTATACACAATGAAGATTATTTACAACTTTTATAGGAATTATAACTATATTTTACT 638
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      CAAGTAGTCCATTTATTTCTTAGGAGTTATGTCATGTTGTCATATTTCTCCAGAAGCAAG 698
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      TTTTTCTTTCAAGAACCCTGAAACTCTTGTGGATAAGACAGGTGTCGTTTTCGCTTTTTT 758
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      TCGAATACATTCCAGTCTATTATTGTAAGCAGTCAATTTCTTTCTAAATTCATAATACTT 818
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      TTGATTGTGATAACTATCATTTGAGTTTTCGAAGTACGTGTTTTTAAAAATACTTTACTT 878
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      ATTGGCTT 886
consensus_2032#1      --------