These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTAACTAACATGACGATGATGAAGCCGACAACAACAACAGTATCAGTAACACCTGTCACATCAACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACCCACACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGAATGATTTACGTCAACAGAATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGACCAATCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAATCGGACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTTGCTAGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAATAATACTATCTGCAAACCAATTTTTGAAAATCTACATTTA] [+] EMBL CD132729 [AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTAACTAACATGACGATGATGAAGCCGACAACAACAACAGTATCAGTAACACCTGTCACATCAACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACCCACACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGAATGATTTACGTCAACAGAATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGACCAATCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAATCGGACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTTGCTAGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAATAATACTATCTGCAAACCAATTTTTGAAAATCTACATTTA] consensusID : consensus_2067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [ACTGTTCTTTCAATGAAAAAGGATCTGAACGACTAACCTCTGACTTATAGTATGGTTTTGGTGTAGTTTGTTGTTTAACTGTAGGAGAATGAGATCCCTTTGATAATTTAGCAACAGGTATAACTAGTGTATTTGGTAATTGTCCAAGACTACGGTTAGTTGGATATTCATATAAATTGAATGAATTATATGTTGGTTTTTTCTTTTGTACTTCTCTTAATTGATGTATAGTATTGGAGTGGTAATTTATTGATTGATTCCATGCTGGACTCGAGTCTAATTTATGTATATAACCTAAAGGTTTGGTTGCACGATCAAAAATTTCAGCTAATCCAGTGGTTGTTGACTTTAAATCATATTTTATTACATTATCAATATCACTTGTTTGTTCTTGATCTTCAACATCATCAACAGCATTACCATCATCACCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACANAACGAATATGAAAGTGAAACAACTAGTGATGGGAATGATNTACGNT] [+] EMBL CD137780 [ACTGTTCTTTCAATGAAAAAGGATCTGAACGACTAACCTCTGACTTATAGTATGGTTTTGGTGTAGTTTGTTGTTTAACTGTAGGAGAATGAGATCCCTTTGATAATTTAGCAACAGGTATAACTAGTGTATTTGGTAATTGTCCAAGACTACGGTTAGTTGGATATTCATATAAATTGAATGAATTATATGTTGGTTTTTTCTTTTGTACTTCTCTTAATTGATGTATAGTATTGGAGTGGTAATTTATTGATTGATTCCATGCTGGACTCGAGTCTAATTTATGTATATAACCTAAAGGTTTGGTTGCACGATCAAAAATTTCAGCTAATCCAGTGGTTGTTGACTTTAAATCATATTTTATTACATTATCAATATCACTTGTTTGTTCTTGATCTTCAACATCATCAACAGCATTACCATCATCACCATCACCATCGAATTGGATAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTGATGAGTCGTCGTCTTGTATTTCACANAACGAATATGAAAGTGAAACAACTAGTGATGGGAATGATNTACGNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2067#0 AATTATCCTCATCACTATAAATTATCTAAAAAAGAGATTAAACATATTCTACCATCATTA 60 consensus_2067#1 -------------ACTGTTCTTTCAATGAAAAAGGATCTGAACG-ACTAACCTCTGACTT 46 *** * ** * ****** * *** * * * * * * consensus_2067#0 ACTAACATGACGATGATGAAGCCGACAAC--AACAACAGTATCAGTAACACCTGTCACAT 118 consensus_2067#1 A-TAGTATGGTTTTGGTGTAGTTTGTTGTTTAACTGTAGGAG-AATGAGATCCCTTTGAT 104 * ** *** ** ** ** *** ** * * * * * * * ** consensus_2067#0 CAACTACTGATAATATTATGAGTAATGTACAACGATATCACCATACAAAACTATACCACC 178 consensus_2067#1 AATTTAGCAACAGG--TATAACTAGTGTATT-TGGTA--ATTGTCCAAGACTA---CGGT 156 * ** * * *** * ** **** * ** * * *** **** * consensus_2067#0 CACACGTAGTAGTACCTCCATCAACAGCACTACCATCATCATCATCACCATCGAATTGGA 238 consensus_2067#1 TAGTTGGATATTCATATAAATTGAATGAATTAT-ATGTTGGTTTTTTCTTTTGTAC---- 211 * * * * * ** * * * ** ** * * * * * * * consensus_2067#0 TAATAATACCAAATCAGAAACAACGGGATAACCAGAAACAAAATTGTCACCATGGTGGTG 298 consensus_2067#1 TTCTCTTAATTGATGTATAGTATTGGAGTGGTAATTTATTGA-TTGATTCCATGCTGGAC 270 * * ** ** * * ** * * * * *** ***** *** consensus_2067#0 ATGAGTCGTCGTCTTGTATTTCACAAAACGATAATGAAAGTGAAACAACTAGTGATGGGA 358 consensus_2067#1 TCGAGTCTAATTTATGTATATAACCTAAAGGTTT----GGTTGCACGATCAAAAATTTCA 326 ***** * ***** * ** ** * * ** ** * * ** * consensus_2067#0 ATGATTTACGTCAACAG-AATTCTAAATTCAAATATAAAATATTACCAAGAGGAATAGAC 417 consensus_2067#1 GCTAATCCAGTGGTTGTTGACTTTAAATCATATTTTATTACATTATCAATATCACTTGTT 386 * * ** * * ***** * * ** * **** *** * * * * consensus_2067#0 CAATCTATGGATCCGATGAAAACAATAAGAAAATCAGCAAAACGAATGAAATATTACGAA 477 consensus_2067#1 TGTTCTTGATCTTCAACATCATCAACAGCATTACCATCATCACCATCACCAT----CGAA 442 *** * * * * *** * * * ** ** ** * ** **** consensus_2067#0 TCGGACTCGGCTAATATTGATCAAGATTCAATTTCCCGAGAATTACTGAATAATAATGTT 537 consensus_2067#1 TTGGAT---AATAATACCAAATCAGAAACAAC------GGGATAACCAGA-AACAAAATT 492 * *** ***** * *** *** * ** ** * ** ** ** consensus_2067#0 GCTAGGAAGAATAGTTCACCGACAACCCATAGTCTTATCACAAGCACTACTAATATTAAT 597 consensus_2067#1 GTCACCATGG-TGGT-----GATGAGTCGTCGTCTTGTATTTCACANAACGAATATGAA- 545 * * * * * ** ** * * * ***** * ** ** ***** ** consensus_2067#0 AATACTATCTGCAAACCAATTTTTGAAA--ATCTACATTTA 636 consensus_2067#1 AGTGAAAC-----AACTAGTGATGGGAATGATNTACGNT-- 579 * * * *** * * * * ** ** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||