cluster # 2176

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Schistosoma mansoni
cluster # 2176 cluster # 2176 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2176#0 length = 437 sequences # 1

consensus_2176#1 length = 218 sequences # 1

consensusID : consensus_2176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [CTGTTGTTGTTGCTGTGGCTGTTGTTGTTTTATTCCATGTTTTCATTAGTTTTCAAGTTGATCAATTGAATGTAGTTTTTTTTGTTGATTTGTTTCCAAGTGAAAAAGAAGAAAGAAAACTGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTTTGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATATATAGCACTATGTATATGTGTGTGTATGGGCCAAGTACTACTACAAGTACTAGTTCGTTGAAAAGAGCTACCTAAACTGTTTCATGTTTGTTTTTTTTTTAATTATTTTCGCTTTCTTGGGTATAATATGTGGTTTGTGGTCGATGGTCATCATTTGCTAGTATCTTTCCTATACATATACATATATATATATATAA]

[+] EMBL BF936895             [CTGTTGTTGTTGCTGTGGCTGTTGTTGTTTTATTCCATGTTTTCATTAGTTTTCAAGTTGATCAATTGAATGTAGTTTTTTTTGTTGATTTGTTTCCAAGTGAAAAAGAAGAAAGAAAACTGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTTTGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATATATAGCACTATGTATATGTGTGTGTATGGGCCAAGTACTACTACAAGTACTAGTTCGTTGAAAAGAGCTACCTAAACTGTTTCATGTTTGTTTTTTTTTTAATTATTTTCGCTTTCTTGGGTATAATATGTGGTTTGTGGTCGATGGTCATCATTTGCTAGTATCTTTCCTATACATATACATATATATATATATAA]




>consensus_2176#0
CTGTTGTTGTTGCTGTGGCTGTTGTTGTTTTATTCCATGTTTTCATTAGTTTTCAAGTTG
ATCAATTGAATGTAGTTTTTTTTGTTGATTTGTTTCCAAGTGAAAAAGAAGAAAGAAAAC
TGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTT
TGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATA
TATAGCACTATGTATATGTGTGTGTATGGGCCAAGTACTACTACAAGTACTAGTTCGTTG
AAAAGAGCTACCTAAACTGTTTCATGTTTGTTTTTTTTTTAATTATTTTCGCTTTCTTGG
GTATAATATGTGGTTTGTGGTCGATGGTCATCATTTGCTAGTATCTTTCCTATACATATA
CATATATATATATATAA

consensusID : consensus_2176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence

                              [TCGAGGCCAGAATCGGCACGAGGTTTTTTGTTGATTTGTTTCCAAGTGAAAAGAAGAAAGAAAACTGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTTTGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATATATATATATATATACACTATGTATATGTGTGTG]

[+] EMBL CD083397             [TCGAGGCCAGAATCGGCACGAGGTTTTTTGTTGATTTGTTTCCAAGTGAAAAGAAGAAAGAAAACTGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTTTGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATATATATATATATATACACTATGTATATGTGTGTG]




>consensus_2176#1
TCGAGGCCAGAATCGGCACGAGGTTTTTTGTTGATTTGTTTCCAAGTGAAAAGAAGAAAG
AAAACTGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCA
GTTTTTGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATAT
ATATATATATATATATATACACTATGTATATGTGTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2176#0      CTGTTGTTGTTGCTGTGGCTGTTGTTGTTTTATTCCATGTTTTCATTAGTTTTCAAGTTG 60
consensus_2176#1      ----------------------------------------------------TCGAGGCC 8
                                                                          ** **   

consensus_2176#0      ATCAATTGAATGTAGTTTTTTTTGTTGATTTGTTTCCAAGTGAAAAAGAAGAAAGAAAAC 120
consensus_2176#1      AGAATCGGCACGAGGTTTTTT--GTTGATTTGTTTCCAAGTGAAAA-GAAGAAAGAAAAC 65
                      *  *   * * *  *******  *********************** *************

consensus_2176#0      TGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTT 180
consensus_2176#1      TGATTTTAGCTCCATCTCATTAACAACTAAAGTGTGAATAAACTTTCATATTTCAGTTTT 125
                      ************************************************************

consensus_2176#0      TGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATA 240
consensus_2176#1      TGTTTGTCTTTTCATTGTTGATTCATCATCATAGTATATATATATATATATATATATATA 185
                      ************************************************************

consensus_2176#0      TATAGCACTATGTATA-TGTGTGTGTATGGGCCAAGTACTACTACAAGTACTAGTTCGTT 299
consensus_2176#1      TATATATATATATACACTATGTATATGTGTGTG--------------------------- 218
                      ****    *** ** * * *** * * ** *                             

consensus_2176#0      GAAAAGAGCTACCTAAACTGTTTCATGTTTGTTTTTTTTTTAATTATTTTCGCTTTCTTG 359
consensus_2176#1      ------------------------------------------------------------
                                                                                  

consensus_2176#0      GGTATAATATGTGGTTTGTGGTCGATGGTCATCATTTGCTAGTATCTTTCCTATACATAT 419
consensus_2176#1      ------------------------------------------------------------
                                                                                  

consensus_2176#0      ACATATATATATATATAA 437
consensus_2176#1      ------------------