cluster # 2230

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Schistosoma mansoni
cluster # 2230 cluster # 2230 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2230#0 length = 448 sequences # 1

consensus_2230#1 length = 260 sequences # 1

consensusID : consensus_2230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGCGAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACCGTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACACATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTATGCCTGTCATCAATATTCTGTGTATCTACTGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTATTTTTATTCTCGGTATTGCAATCGTTGTATCGATGTGTGCTCTTGGTTGTGGTGGTCCGATTCAATGGATTCTCACATTGTCTGTATTCCG]

[+] EMBL CD083965             [GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGCGAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACCGTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACACATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTATGCCTGTCATCAATATTCTGTGTATCTACTGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTATTTTTATTCTCGGTATTGCAATCGTTGTATCGATGTGTGCTCTTGGTTGTGGTGGTCCGATTCAATGGATTCTCACATTGTCTGTATTCCG]




>consensus_2230#0
GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGC
GAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACC
GTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACA
CATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTAT
GCCTGTCATCAATATTCTGTGTATCTACTGTATACGGATTGTATGGATTACTAAGTGGAA
AGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTATTT
TTATTCTCGGTATTGCAATCGTTGTATCGATGTGTGCTCTTGGTTGTGGTGGTCCGATTC
AATGGATTCTCACATTGTCTGTATTCCG

consensusID : consensus_2230#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [GATGCAAGCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAACGACCCATTTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGTGGTGCCGTTCAAAGGTTTCGCAACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAACGTCTATAGCTGGAAAACCC]

[+] EMBL AI739720             [GATGCAAGCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAACGACCCATTTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGTGGTGCCGTTCAAAGGTTTCGCAACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAACGTCTATAGCTGGAAAACCC]




>consensus_2230#1
GATGCAAGCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTAC
TAAGTGGAAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAAC
GACCCATTTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGT
GGTGCCGTTCAAAGGTTTCGCAACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAA
CGTCTATAGCTGGAAAACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2230#0      GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGC 60
consensus_2230#1      ------------------------------------------------------------
                                                                                  

consensus_2230#0      GAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACC 120
consensus_2230#1      ------------------------------------------------------------
                                                                                  

consensus_2230#0      GTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACA 180
consensus_2230#1      ------------------------------------------------------------
                                                                                  

consensus_2230#0      CATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTAT 240
consensus_2230#1      -----------------------------------------------------GATGCAA 7
                                                                           * ** * 

consensus_2230#0      GCCTGTCATCAA-TATTCTG-TGTATCTACTGTATACGGATTGTATGGATTACTAAGTGG 298
consensus_2230#1      GCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTACTAAGTGG 67
                      ***** ****** ******* ** *** ** *****************************

consensus_2230#0      AAAGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTAT 358
consensus_2230#1      AAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAACGACCCAT 127
                      ********** ***************************  ******** ** ***** **

consensus_2230#0      TTTTATTCTCGGTATTGCAATCGTTGTAT-CGATGTGTGCTCTTGGTTGTGGTGGTCCGA 417
consensus_2230#1      TTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGTGGTGCCG 187
                      ******** ***  ****** *******  ***   ***  * * * * ******* *  

consensus_2230#0      TTCAATGGATTCTCACATTGTCTGTATTCCG----------------------------- 448
consensus_2230#1      TTCAAAGGTTTCGCA-ACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAACGTCTA 246
                      ***** ** *** ** * ** * * * ****                             

consensus_2230#0      --------------
consensus_2230#1      TAGCTGGAAAACCC 260