cluster # 2242

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Schistosoma mansoni
cluster # 2242 cluster # 2242 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2242#0 length = 283 sequences # 1

consensus_2242#1 length = 240 sequences # 1

consensusID : consensus_2242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [CTCGAGGCAGATTCGGCACGAGGAGTTTGTTTATTAACAAATCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAGACAGAGGTAAGAAACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCGTAATATTTGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAAAACAAAGCAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA]

[+] EMBL CD084080             [CTCGAGGCAGATTCGGCACGAGGAGTTTGTTTATTAACAAATCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAGACAGAGGTAAGAAACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCGTAATATTTGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAAAACAAAGCAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA]




>consensus_2242#0
CTCGAGGCAGATTCGGCACGAGGAGTTTGTTTATTAACAAATCATCGAAAGACAATGTAC
ATACAGACAGTAACAACAACAAGACAGAGGTAAGAAACAAAGAAAGAAAATGAAAAAGAA
AGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCGTAATATT
TGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAAAACAAAG
CAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA

consensusID : consensus_2242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATACACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG]

[+] EMBL SMAA40595            [TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATACACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG]




>consensus_2242#1
TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATAC
ACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACA
ATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGA
AAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2242#0      ------------------------------------------------------------
consensus_2242#1      TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATAC 60
                                                                                  

consensus_2242#0      --CTCGAGGCAGATTCGGCACGAGGA---GTTTGTTTATTAACAAAT-CATCGAAAGACA 54
consensus_2242#1      ACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACA 120
                        ** * *  *   *  * *  ****   ****************** ************

consensus_2242#0      ATGTACATACAGACAGTAACAACAACAA-GACAGAGGTAAGAAACAAAGAAAGAAAATGA 113
consensus_2242#1      ATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGA 180
                      **************************** ************* *****************

consensus_2242#0      AAAAGAAAGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCG 173
consensus_2242#1      AAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG 240
                      ********************** ********** **************************

consensus_2242#0      TAATATTTGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAA 233
consensus_2242#1      ------------------------------------------------------------
                                                                                  

consensus_2242#0      AACAAAGCAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA 283
consensus_2242#1      --------------------------------------------------