cluster # 2243

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Schistosoma mansoni
cluster # 2243 cluster # 2243 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2243#0 length = 334 sequences # 1

consensus_2243#1 length = 285 sequences # 1

consensusID : consensus_2243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [GTTTTTTTTTTTTTTTTTTAAATAAGAAGGAACTCAACTTAATGAAATCAATAGTGNAAATTGAAATAAACATCTCTGTTTACCGATTTAACTGTATCACATAATTTTGACTTTNCTCTGGACTGTTTTNCTTCTTCTTCTTCCTGTTGTTCACNTTGTTGTTGTTTACNTTCAGCATTCCATTGAGTTTGTTCTTCAANAACACNTTGTTGAGCAATAGTAANACCANATGAATTTTTCACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTNCNTTTACTACTTAAACCACCGTCTGGTTTGAAAATAGGANCTAAAATGAATTTTGATT]

[+] EMBL AI111059             [GTTTTTTTTTTTTTTTTTTAAATAAGAAGGAACTCAACTTAATGAAATCAATAGTGNAAATTGAAATAAACATCTCTGTTTACCGATTTAACTGTATCACATAATTTTGACTTTNCTCTGGACTGTTTTNCTTCTTCTTCTTCCTGTTGTTCACNTTGTTGTTGTTTACNTTCAGCATTCCATTGAGTTTGTTCTTCAANAACACNTTGTTGAGCAATAGTAANACCANATGAATTTTTCACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTNCNTTTACTACTTAAACCACCGTCTGGTTTGAAAATAGGANCTAAAATGAATTTTGATT]




>consensus_2243#0
GTTTTTTTTTTTTTTTTTTAAATAAGAAGGAACTCAACTTAATGAAATCAATAGTGNAAA
TTGAAATAAACATCTCTGTTTACCGATTTAACTGTATCACATAATTTTGACTTTNCTCTG
GACTGTTTTNCTTCTTCTTCTTCCTGTTGTTCACNTTGTTGTTGTTTACNTTCAGCATTC
CATTGAGTTTGTTCTTCAANAACACNTTGTTGAGCAATAGTAANACCANATGAATTTTTC
ACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTNCNTTTACTACTTAAACCACCGTCT
GGTTTGAAAATAGGANCTAAAATGAATTTTGATT

consensusID : consensus_2243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [GTTCAGCATTCCATTGAGTTTGTTGTTCAAGAACACGTTGTTGAGCAATAGTAAGACCAGATGAATTTTTCACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTACGTATACTACTTAAACCGCCGTCTGGTTTGAAAATAGGAGCTTTCATTTGTGATGGATGCGATTCTGTCTGATTAACATCATCCCAACCAACTGATGATGAATCCACTCGATCTGTCTGTACACCGAATTTACCACCAAATCCTTTAGAATAGTCCACTTGCGATGGATGATGACTGG]

[-] EMBL CD064519             [GTTCAGCATTCCATTGAGTTTGTTGTTCAAGAACACGTTGTTGAGCAATAGTAAGACCAGATGAATTTTTCACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTACGTATACTACTTAAACCGCCGTCTGGTTTGAAAATAGGAGCTTTCATTTGTGATGGATGCGATTCTGTCTGATTAACATCATCCCAACCAACTGATGATGAATCCACTCGATCTGTCTGTACACCGAATTTACCACCAAATCCTTTAGAATAGTCCACTTGCGATGGATGATGACTGG]




>consensus_2243#1
GTTCAGCATTCCATTGAGTTTGTTGTTCAAGAACACGTTGTTGAGCAATAGTAAGACCAG
ATGAATTTTTCACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTACGTATACTACTTA
AACCGCCGTCTGGTTTGAAAATAGGAGCTTTCATTTGTGATGGATGCGATTCTGTCTGAT
TAACATCATCCCAACCAACTGATGATGAATCCACTCGATCTGTCTGTACACCGAATTTAC
CACCAAATCCTTTAGAATAGTCCACTTGCGATGGATGATGACTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2243#0      GTTTTTTTTTTTTTTTTTTAAATAAGAAGGAACTCAACTTAATGAAATCAATAGTGNAAA 60
consensus_2243#1      ------------------------------------------------------------
                                                                                  

consensus_2243#0      TTGAAATAAACATCTCTGTTTACCGATTTAACTGTATCACATAATTTTGACTTTNCTCTG 120
consensus_2243#1      ------------------------------------------------------------
                                                                                  

consensus_2243#0      GACTGTTTTNCTTCTTCTTCTTCCTGTTGTTCACNTTGTTGTTGTTTACNTTCAGCATTC 180
consensus_2243#1      -------------------------------------------------GTTCAGCATTC 11
                                                                        **********

consensus_2243#0      CATTGAGTTTGTTCTTCAANAACACNTTGTTGAGCAATAGTAANACCANATGAATTTTTC 240
consensus_2243#1      CATTGAGTTTGTTGTTCAAGAACACGTTGTTGAGCAATAGTAAGACCAGATGAATTTTTC 71
                      ************* ***** ***** ***************** **** ***********

consensus_2243#0      ACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTNCNTTTACTACTTAAACCACCGTCT 300
consensus_2243#1      ACATTGTTCGAATTAATTCCTTGTTCGAATCGTGTACGTATACTACTTAAACCGCCGTCT 131
                      *********************************** * * ************* ******

consensus_2243#0      GGTTTGAAAATAGGANCTAAAATGAATTTTGATT-------------------------- 334
consensus_2243#1      GGTTTGAAAATAGGAGCTTTCATTTGTGATGGATGCGATTCTGTCTGATTAACATCATCC 191
                      *************** **   **   *  **  *                          

consensus_2243#0      ------------------------------------------------------------
consensus_2243#1      CAACCAACTGATGATGAATCCACTCGATCTGTCTGTACACCGAATTTACCACCAAATCCT 251
                                                                                  

consensus_2243#0      ----------------------------------
consensus_2243#1      TTAGAATAGTCCACTTGCGATGGATGATGACTGG 285