These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATCGGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATTAGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTATTTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGTTTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAATTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTTCCATACTCACTTGACGATTCTGGTCATTTCAAAACCATTGCAAAGTTTGACTGTCGTGGTTTAGAATTTACTGAATTTTCTCCTCGTTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTTTGATGACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAA] [+] EMBL CD084161 [TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATCGGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATTAGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTATTTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGTTTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAATTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTTCCATACTCACTTGACGATTCTGGTCATTTCAAAACCATTGCAAAGTTTGACTGTCGTGGTTTAGAATTTACTGAATTTTCTCCTCGTTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTTTGATGACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAA] consensusID : consensus_2246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [CCCTGGCGGCGTACTTTCCATACTCACTTGAGCATTTGGTCATTTCAAAACCCATTGCAAAGTTTGACTCTCCGTGGTTTAGAATTTACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGCTTCAAGTGTCAACTCCGATGCCGTTTTGATGACATTTCATTAACAGATGAGATTTGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAAATTTTCAAAGTCAAATAATTAAACTGAAATGTTAATAACTGAATATTTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTATATTATTATTCAAAAATAAAATACTTGT] [-] EMBL AI559073 [CCCTGGCGGCGTACTTTCCATACTCACTTGAGCATTTGGTCATTTCAAAACCCATTGCAAAGTTTGACTCTCCGTGGTTTAGAATTTACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGCTTCAAGTGTCAACTCCGATGCCGTTTTGATGACATTTCATTAACAGATGAGATTTGTGCGATTATGATGAGAAAGGTAAATGTGAAGTCAGCATACAAAATTTTCAAAGTCAAATAATTAAACTGAAATGTTAATAACTGAATATTTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTATATTATTATTCAAAAATAAAATACTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2246#0 TTCGGCACGAGGAGATAAATACGTAAACTGATCAAAGCTATTTGTGACTGAATTCTTATC 60 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 GGATATCTTCCTAGCCCAATTGTCCCAAATACACTAATGGTACTACTTGGTGTGCAAATT 120 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 AGTTGTGAACTTACGAATTTAACTAATCTAAGTCCTTCATGTGACGATTTTCGTTGGTAT 180 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 TTGAAGGTAAAATGCGGGAACTGTGGCGAAGATACTCATGATTATGTATATATTGATGGT 240 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 TTAGAAAAGACACCAATCCAAGACAGTCGTGGGGATGCGAATTTAGTAATCCGGTGCAAA 300 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 TTTTGTAAACGAGTTTCAAATGCGGATATCATTCCTGGCAGCATACTT-CCATACTCACT 359 consensus_2246#1 --------------------------------CCCTGGCGGCGTACTTTCCATACTCACT 28 ****** ** ***** *********** consensus_2246#0 TGACGATTCTGGTCATTTCAAAACC-ATTGCAAAGTTTGACTGTC-GTGGTTTAGAATTT 417 consensus_2246#1 TGAGCATT-TGGTCATTTCAAAACCCATTGCAAAGTTTGACTCTCCGTGGTTTAGAATTT 87 *** *** **************** **************** ** ************** consensus_2246#0 ACTGAATTTTCTCCTCG-TTCTGGTTGGTCTGCTTCAAGTGTCAACTCCGATGCGGTTTT 476 consensus_2246#1 ACTGGAATTTCTCCTCGCTTCTGGGTGGTCTGCTTCAAGTGTCAACTCCGATGCCGTTTT 147 **** * ********** ****** ***************************** ***** consensus_2246#0 TGATGACATTTCATTAACAGATGAGATTTGGTGCGATTATGATGAGAAAGGTAAATGTGA 536 consensus_2246#1 -GATGACATTTCATTAACAGATGAGATTTG-TGCGATTATGATGAGAAAGGTAAATGTGA 205 ***************************** ***************************** consensus_2246#0 AGTCAGCATACAAA---------------------------------------------- 550 consensus_2246#1 AGTCAGCATACAAAATTTTCAAAGTCAAATAATTAAACTGAAATGTTAATAACTGAATAT 265 ************** consensus_2246#0 ------------------------------------------------------------ consensus_2246#1 TTGTGATTTGTTTAACTTCGTGTTTGTATTTTGTATATTATTATTCAAAAATAAAATACT 325 consensus_2246#0 --- consensus_2246#1 TGT 328 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||